wood decay metagenome (ID 603240) - BioProject

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Accession: PRJNA603240 ID: 603240

wood decay metagenome

Metagenomic and metatranscriptomic profiling of deadwood associated microbial community

This BioProject encompasses data about gene potential, gene expression and total RNA profile of fungi and bacteria associated with wood of Fagus sylvatica decomposing in a natural temperate forest (Zofin reserve, Czech Republic, Europe).

Accession	PRJNA603240
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	wood decay metagenome[Taxonomy ID: 1593443] unclassified sequences; metagenomes; ecological metagenomes; wood decay metagenome
Publications	Tláskal V et al., "Metagenomes, metatranscriptomes and microbiomes of naturally decomposing deadwood.", Sci Data, 2021 Aug 3;8(1):198
Submission	Registration date: 23-Nov-2020 Czech Academy of Science
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	130
WGS master	129
TSA master	1
SRA Experiments	99
Publications
PubMed	1
PMC	1
Other datasets
BioSample	155
Assembly	129

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

129
129

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_037355245.1	JBBCHG000000000	SAMN40260329	S6_bin.4	Acetobacteraceae bacterium
GCA_037201625.1	JBBCGR000000000	SAMN40260314	CoA_maxb_bin.80	Acetobacteraceae bacterium
GCA_015655275.1	JAATFI000000000	SAMN14420145	bin_20	Acidimicrobiales bacterium
GCA_037200625.1	JBBCIH000000000	SAMN40260356	S7_bin.8	Acidobacteriota bacterium
GCA_015654575.1	JAATGR000000000	SAMN14420180	bin_38	Actinomycetales bacterium
GCA_015654475.1	JAATGV000000000	SAMN14420184	bin_70	Actinomycetales bacterium
GCA_015655255.1	JAATFJ000000000	SAMN14420146	bin_214	Actinomycetales bacterium
GCA_015655415.1	JAATFB000000000	SAMN14420138	bin_16	Actinomycetales bacterium
GCA_015655375.1	JAATFD000000000	SAMN14420140	bin_173	Actinomycetales bacterium
GCA_015655615.1	JAATES000000000	SAMN14420129	bin_106	Actinomycetales bacterium
GCA_015655445.1	JAATFA000000000	SAMN14420137	bin_157	Actinomycetales bacterium
GCA_037200585.1	JBBCGC000000000	SAMN40260299	bin.37	Actinomycetota bacterium
GCA_037200085.1	JBBCHT000000000	SAMN40260342	S7_bin.12	Actinomycetota bacterium
GCA_037200015.1	JBBCHB000000000	SAMN40260324	S6_bin.10	Aliidongia sp.
GCA_037200005.1	JBBCGY000000000	SAMN40260321	CoA_metab_bin.92	Alphaproteobacteria bacterium
GCA_037200445.1	JBBCGH000000000	SAMN40260304	CoA_maxb_bin.1	Alphaproteobacteria bacterium
GCA_037200745.1	JBBCHK000000000	SAMN40260333	S6_conc_bin.97	Alphaproteobacteria bacterium
GCA_037201565.1	JBBCGW000000000	SAMN40260319	CoA_metab_bin.516	Alphaproteobacteria bacterium
GCA_015654715.1	JAATGK000000000	SAMN14420173	bin_33	Alphaproteobacteria bacterium
GCA_015654705.1	JAATGL000000000	SAMN14420174	bin_332	Alphaproteobacteria bacterium
GCA_015654635.1	JAATGP000000000	SAMN14420178	bin_35	Alphaproteobacteria bacterium
GCA_037200605.1	JBBCHX000000000	SAMN40260346	S7_bin.23	Asticcacaulis sp.
GCA_015654795.1	JAATGF000000000	SAMN14420168	bin_301	Bacteroidales bacterium
GCA_015654525.1	JAATGT000000000	SAMN14420182	bin_63	Bacteroidales bacterium
GCA_015654535.1	JAATGU000000000	SAMN14420183	bin_67	Bacteroidales bacterium
GCA_037200165.1	JBBCHW000000000	SAMN40260345	S7_bin.2	Bacteroidota bacterium
GCA_037200305.1	JBBCGZ000000000	SAMN40260322	S57_bin.1	Bacteroidota bacterium
GCA_037200265.1	JBBCIL000000000	SAMN40260360	S7_metab_bin.52	Bacteroidota bacterium
GCA_037200765.1	JBBCII000000000	SAMN40260357	S7_bin.9	Bacteroidota bacterium
GCA_037200425.1	JBBCGA000000000	SAMN40260297	bin.31	Bacteroidota bacterium
GCA_037200565.1	JBBCGB000000000	SAMN40260298	bin.33	Bacteroidota bacterium
GCA_037201025.1	JBBCFX000000000	SAMN40260294	bin.1	Bauldia sp.
GCA_037200845.1	JBBCGQ000000000	SAMN40260313	CoA_maxb_bin.58	Bauldia sp.
GCA_015655165.1	JAATFN000000000	SAMN14420150	bin_227	Betaproteobacteria bacterium
GCA_015654605.1	JAATGO000000000	SAMN14420177	bin_347	Betaproteobacteria bacterium
GCA_037201505.1	JBBCHO000000000	SAMN40260337	S6_metab_bin.109	Bradyrhizobium sp.
GCA_037200925.1	JBBCGO000000000	SAMN40260311	CoA_maxb_bin.3	Candidatus Doudnabacteria bacterium
GCA_037201605.1	JBBCGM000000000	SAMN40260309	CoA_maxb_bin.113	Candidatus Moraniibacteriota bacterium
GCA_015655515.1	JAATEX000000000	SAMN14420134	bin_145	Candidatus Nomurabacteria bacterium
GCA_037200465.1	JBBCFY000000000	SAMN40260295	bin.23	Candidatus Saccharibacteria bacterium
GCA_037200105.1	JBBCHN000000000	SAMN40260336	S6_maxb_bin.5	Candidatus Saccharibacteria bacterium
GCA_015655045.1	JAATFU000000000	SAMN14420157	bin_26	Candidatus Saccharibacteria bacterium
GCA_037199985.1	JBBCGX000000000	SAMN40260320	CoA_metab_bin.720	Caulobacteraceae bacterium
GCA_037199965.1	JBBCHY000000000	SAMN40260347	S7_bin.24	Caulobacteraceae bacterium
GCA_037201645.1	JBBCHF000000000	SAMN40260328	S6_bin.2	Caulobacteraceae bacterium
GCA_037200685.1	JBBCIG000000000	SAMN40260355	S7_bin.6	Chitinophagaceae bacterium
GCA_015655015.1	JAATFV000000000	SAMN14420158	bin_264	Chitinophagales bacterium
GCA_015654695.1	JAATGJ000000000	SAMN14420172	bin_325	Chitinophagales bacterium
GCA_015655125.1	JAATFP000000000	SAMN14420152	bin_231	Chitinophagales bacterium
GCA_015655435.1	JAATFC000000000	SAMN14420139	bin_168	Chitinophagales bacterium
GCA_015654595.1	JAATGQ000000000	SAMN14420179	bin_354	Chitinophagales bacterium
GCA_015654495.1	JAATGW000000000	SAMN14420185	bin_80	Chitinophagales bacterium
GCA_037200205.1	JBBCHV000000000	SAMN40260344	S7_bin.18	Chthoniobacter sp.
GCA_015655545.1	JAATET000000000	SAMN14420130	bin_113	Chthoniobacterales bacterium
GCA_015655565.1	JAATEU000000000	SAMN14420131	bin_114	Clostridiales bacterium
GCA_015655075.1	JAATFT000000000	SAMN14420156	bin_249	Clostridiales bacterium
GCA_015655215.1	JAATFL000000000	SAMN14420148	bin_223	Coriobacteriia bacterium
GCA_015688915.1	JAATGX000000000	SAMN14420186	bin_92	Desulfuromonadales bacterium
GCA_037200825.1	JBBCHL000000000	SAMN40260334	S6_maxb_bin.0	Edaphobacter sp.
GCA_015655145.1	JAATFO000000000	SAMN14420151	bin_230	Enterobacterales bacterium
GCA_015654895.1	JAATFZ000000000	SAMN14420162	bin_272	Enterobacterales bacterium
GCA_015654925.1	JAATFX000000000	SAMN14420160	bin_27	Enterobacterales bacterium
GCA_015654745.1	JAATGH000000000	SAMN14420170	bin_314	Enterobacterales bacterium
GCA_037200285.1	JBBCHR000000000	SAMN40260340	S6_metab_bin.95	Ferruginibacter sp.
GCA_037200725.1	JBBCIF000000000	SAMN40260354	S7_bin.35	Ferruginibacter sp.
GCA_015654515.1	JAATGS000000000	SAMN14420181	bin_43	Flavobacteriales bacterium
GCA_037203625.1	JBBCHH000000000	SAMN40260330	S6_bin.5	Galbitalea sp.
GCA_037200125.1	JBBCGS000000000	SAMN40260315	CoA_metab_bin.120	Gammaproteobacteria bacterium
GCA_037355305.1	JBBCIA000000000	SAMN40260349	S7_bin.26	Gammaproteobacteria bacterium
GCA_015655465.1	JAATEY000000000	SAMN14420135	bin_15	Gammaproteobacteria bacterium
GCA_015655535.1	JAATEW000000000	SAMN14420133	bin_134	Hyphomicrobiales bacterium
GCA_015655095.1	JAATFR000000000	SAMN14420154	bin_243	Hyphomicrobiales bacterium
GCA_015654965.1	JAATGD000000000	SAMN14420166	bin_288	Hyphomicrobiales bacterium
GCA_037201465.1	JBBCIE000000000	SAMN40260353	S7_bin.32	Hyphomicrobium sp.
GCA_037200325.1	JBBCHI000000000	SAMN40260331	S6_bin.7	Ignavibacteriota bacterium
GCA_015654945.1	JAATGB000000000	SAMN14420164	bin_276	Lactobacillales bacterium
GCA_015655485.1	JAATEZ000000000	SAMN14420136	bin_153	Lactobacillales bacterium
GCA_015654815.1	JAATGC000000000	SAMN14420165	bin_283	Lactobacillales bacterium
GCA_037355415.1	JBBCHZ000000000	SAMN40260348	S7_bin.25	Lacunisphaera sp.
GCA_037200065.1	JBBCHS000000000	SAMN40260341	S7_bin.1	Limisphaerales bacterium
GCA_037200185.1	JBBCIJ000000000	SAMN40260358	S7_metab_bin.130	Limisphaerales bacterium
GCA_037200545.1	JBBCGE000000000	SAMN40260301	bin.6	Limisphaerales bacterium
GCA_015655355.1	JAATFG000000000	SAMN14420143	bin_187	Lysobacterales bacterium
GCA_015655335.1	JAATFF000000000	SAMN14420142	bin_18	Lysobacterales bacterium
GCA_015655035.1	JAATFS000000000	SAMN14420155	bin_247	Lysobacterales bacterium
GCA_037200525.1	JBBCGG000000000	SAMN40260303	CoA_maxb_bin.0	Methylocella sp.
GCA_037200645.1	JBBCHQ000000000	SAMN40260339	S6_metab_bin.286	Methylovirgula sp.
GCA_037200945.1	JBBCGP000000000	SAMN40260312	CoA_maxb_bin.4	Methylovirgula sp.
GCA_037355285.1	JBBCHD000000000	SAMN40260326	S6_bin.14	Nitrosomonadales bacterium
GCA_037200395.1	JBBCGT000000000	SAMN40260316	CoA_metab_bin.152	Pararobbsia sp.
GCA_015654675.1	JAATGM000000000	SAMN14420175	bin_345	Planctomycetota bacterium
GCA_037200245.1	JBBCIM000000000	SAMN40260361	S7_metab_bin.77	Pseudolabrys sp.
GCA_037200225.1	JBBCHE000000000	SAMN40260327	S6_bin.15	Pseudomonadota bacterium
GCA_037200665.1	JBBCGD000000000	SAMN40260300	bin.44	Pseudomonadota bacterium
GCA_037200975.1	JBBCGI000000000	SAMN40260305	CoA_maxb_bin.100	Pseudomonadota bacterium
GCA_037200805.1	JBBCHU000000000	SAMN40260343	S7_bin.15	Pseudomonadota bacterium
GCA_037200885.1	JBBCIN000000000	SAMN40260362	S7_metab_bin.80	Pseudomonadota bacterium
GCA_037201585.1	JBBCHA000000000	SAMN40260323	S57_bin.5	Puia sp.
GCA_037355265.1	JBBCIB000000000	SAMN40260350	S7_bin.28	Rhizomicrobium sp.
GCA_037201525.1	JBBCHP000000000	SAMN40260338	S6_metab_bin.170	Rhizomicrobium sp.
GCA_037200865.1	JBBCIC000000000	SAMN40260351	S7_bin.29	Rhizomicrobium sp.
GCA_037200985.1	JBBCGJ000000000	SAMN40260306	CoA_maxb_bin.106	Rhizomicrobium sp.
GCA_037200385.1	JBBCGL000000000	SAMN40260308	CoA_maxb_bin.110	Rhizomicrobium sp.
GCA_037200485.1	JBBCGF000000000	SAMN40260302	bin.9	Rhizomicrobium sp.
GCA_037200045.1	JBBCHM000000000	SAMN40260335	S6_maxb_bin.1	Rhizomicrobium sp.
GCA_015654855.1	JAATGA000000000	SAMN14420163	bin_273	Rhodobacterales bacterium
GCA_037201545.1	JBBCHJ000000000	SAMN40260332	S6_bin.9	Rhodospirillales bacterium
GCA_015654825.1	JAATGE000000000	SAMN14420167	bin_299	Rhodospirillales bacterium
GCA_015654915.1	JAATFY000000000	SAMN14420161	bin_270	Rhodospirillales bacterium
GCA_015654725.1	JAATGI000000000	SAMN14420171	bin_32	Rhodospirillales bacterium
GCA_015654615.1	JAATGN000000000	SAMN14420176	bin_346	Rhodospirillales bacterium
GCA_015655225.1	JAATFK000000000	SAMN14420147	bin_221	Solirubrobacterales bacterium
GCA_015655115.1	JAATFQ000000000	SAMN14420153	bin_233	Sphingobacteriales bacterium
GCA_015654985.1	JAATFW000000000	SAMN14420159	bin_267	Sphingobacteriales bacterium
GCA_037200705.1	JBBCID000000000	SAMN40260352	S7_bin.3	Sphingomonas sp.
GCA_037200785.1	JBBCIK000000000	SAMN40260359	S7_metab_bin.188	Sphingomonas sp.
GCA_037200345.1	JBBCGV000000000	SAMN40260318	CoA_metab_bin.443	Steroidobacteraceae bacterium
GCA_037200365.1	JBBCGU000000000	SAMN40260317	CoA_metab_bin.200	Terracidiphilus sp.
GCA_037200505.1	JBBCFZ000000000	SAMN40260296	bin.25	Terricaulis sp.
GCA_015654835.1	JAATGG000000000	SAMN14420169	bin_312	Terriglobales bacterium
GCA_015655195.1	JAATFM000000000	SAMN14420149	bin_225	Terriglobales bacterium
GCA_015655315.1	JAATFH000000000	SAMN14420144	bin_2	Terriglobales bacterium
GCA_015655365.1	JAATFE000000000	SAMN14420141	bin_175	Terriglobales bacterium
GCA_015655585.1	JAATEV000000000	SAMN14420132	bin_12	Terriglobales bacterium
GCA_037200145.1	JBBCHC000000000	SAMN40260325	S6_bin.11	Verrucomicrobiota bacterium
GCA_037200905.1	JBBCGN000000000	SAMN40260310	CoA_maxb_bin.114	bacterium
GCA_037200965.1	JBBCGK000000000	SAMN40260307	CoA_maxb_bin.109	bacterium
GCA_037975565.1	JBBCBH000000000	SAMN40248697	-	wood decay metagenome
GCA_015689235.1	JACRUT0000000000	SAMN14599990	-	wood decay metagenome

SRA Data Details

Parameter	Value
Data volume, Gbases	365
Data volume, Tbytes	0.18

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wood decay metagenome

Metagenomic and metatranscriptomic profiling of deadwood associated microbial community

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