ID 1054096 - BioProject

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Links from BioSample

Accession: PRJNA1054096 ID: 1054096

Metagenomes and metatranscriptomes from tetrachloroethene-dechlorinating consortium SDC-9 growing in the presence and absence of biochar

The purposel of this study was to retrieve metagenomic and metatranscriptomic sequence information from a consortium (SDC-9) containing organohalide-respiring bacteria (OHRB) that convert teatrachloroethene to ethene. More...

Accession	PRJNA1054096
Data Type	Genome sequencing and assembly
Scope	Multispecies
Grants	"Elucidating mechanisms for enhanced anaerobic bioremediation in the presence of carbonaceous materials using an integrated material science and molecular microbial ecology approach" (Grant ID R01 ES032671, National Institute of Environmental Health Sciences)
Submission	Registration date: 18-Dec-2023 University of Iowa
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	124
WGS master	122
Genomic DNA	2
SRA Experiments	27
Protein Sequences	191
Other datasets
BioSample	151
Assembly	122

Assembly details:

Download

Assembly level

Number of Assemblies

Contig

Total

122
122

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_034926195.1	JAYFRG000000000	SAMN38932819	CA_70	Acetobacterium wieringae
GCA_034933405.1	JAYFNO000000000	SAMN38932723	3L_26	Acidaminococcaceae bacterium
GCA_034927515.1	JAYFPX000000000	SAMN38932784	CA_140	Aminivibrio sp.
GCA_034926885.1	JAYFQR000000000	SAMN38932804	CA_25	Aminobacterium sp.
GCA_034933225.1	JAYFNV000000000	SAMN38932730	5C_40	Anaerolineaceae bacterium
GCA_034927385.1	JAYFQB000000000	SAMN38932788	CA_152	Anaerolineaceae bacterium
GCA_034927295.1	JAYFQI000000000	SAMN38932795	CA_178	Anaerolineaceae bacterium
GCA_034926255.1	JAYFRD000000000	SAMN38932816	CA_64	Anaerolineaceae bacterium
GCA_034927725.1	JAYFPM000000000	SAMN38932773	CA_119	Anaerolineaceae bacterium
GCA_034925685.1	JAYFRO000000000	SAMN38932827	CA_92	Anaeromusa sp.
GCA_034926905.1	JAYFQS000000000	SAMN38932805	CA_27	Anaerorhabdus sp.
GCA_034933025.1	JAYFOE000000000	SAMN38932739	5C_74	Anaerotignum propionicum
GCA_034927775.1	JAYFPL000000000	SAMN38932772	CA_118	Anaerovorax sp.
GCA_034928005.1	JAYFPH000000000	SAMN38932768	CA_110	Angelakisella sp.
GCA_034928225.1	JAYFPC000000000	SAMN38932763	9L_52_R1	Bacteroidaceae bacterium
GCA_034926425.1	JAYFRA000000000	SAMN38932813	CA_6	Bacteroidales bacterium
GCA_034933505.1	JAYFNJ000000000	SAMN38932718	3C_7	Bacteroidales bacterium
GCA_034927305.1	JAYFQG000000000	SAMN38932793	CA_176	Bacteroides graminisolvens
GCA_034933385.1	JAYFNP000000000	SAMN38932724	3L_29	Burkholderiaceae bacterium
GCA_034927475.1	JAYFPW000000000	SAMN38932783	CA_14	Candidatus Elulimicrobiales bacterium
GCA_034933525.1	JAYFNI000000000	SAMN38932717	3C_52	Candidatus Fimivivens sp.
GCA_034933445.1	JAYFNL000000000	SAMN38932720	3L_18	Candidatus Limiplasma sp.
GCA_034927815.1	JAYFPK000000000	SAMN38932771	CA_117	Candidatus Limiplasma sp.
GCA_034927625.1	JAYFPR000000000	SAMN38932778	CA_128	Candidatus Limiplasma sp.
GCA_034928535.1	JAYFOV000000000	SAMN38932756	9C_37	Candidatus Limiplasma sp.
GCA_034927755.1	JAYFPN000000000	SAMN38932774	CA_12	Candidatus Metalachnospira sp.
GCA_034928145.1	JAYFPE000000000	SAMN38932765	CA_100	Candidatus Pelethousia sp.
GCA_034933245.1	JAYFNX000000000	SAMN38932732	5C_52	Candidatus Pelethousia sp.
GCA_034927595.1	JAYFPQ000000000	SAMN38932777	CA_127_R1	Christensenella sp.
GCA_034927525.1	JAYFPU000000000	SAMN38932781	CA_135	Christensenella sp.
GCA_034926875.1	JAYFQO000000000	SAMN38932801	CA_20	Christensenella sp.
GCA_034926635.1	JAYFQX000000000	SAMN38932810	CA_43	Christensenella sp.
GCA_034926785.1	JAYFQU000000000	SAMN38932807	CA_33	Christensenella sp.
GCA_034927375.1	JAYFQC000000000	SAMN38932789	CA_154	Christensenellaceae bacterium
GCA_034932605.1	JAYFOO000000000	SAMN38932749	7C_62	Christensenellaceae bacterium
GCA_034933265.1	JAYFNW000000000	SAMN38932731	5C_42	Cloacibacillus evryensis
GCA_034926675.1	JAYFQW000000000	SAMN38932809	CA_42	Clostridia bacterium
GCA_034926405.1	JAYFRB000000000	SAMN38932814	CA_62	Clostridiaceae bacterium
GCA_034926225.1	JAYFRF000000000	SAMN38932818	CA_7	Clostridiaceae bacterium
GCA_034927345.1	JAYFQE000000000	SAMN38932791	CA_164	Clostridiaceae bacterium
GCA_034926865.1	JAYFQP000000000	SAMN38932802	CA_23	Clostridiaceae bacterium
GCA_034933145.1	JAYFOA000000000	SAMN38932735	5C_62	Clostridiaceae bacterium
GCA_034925975.1	JAYFRK000000000	SAMN38932823	CA_81	Clostridium sp.
GCA_034928625.1	JAYFOU000000000	SAMN38932755	9C_17	Clostridium tyrobutyricum
GCA_034933065.1	JAYFOD000000000	SAMN38932738	5C_7	Coriobacteriia bacterium
GCA_034927175.1	JAYFQN000000000	SAMN38932800	CA_189	Dehalococcoides mccartyi
GCA_034933185.1	JAYFNZ000000000	SAMN38932734	5C_60	Desulfitobacterium hafniense
GCA_034927245.1	JAYFQK000000000	SAMN38932797	CA_182	Desulfitobacterium sp.
GCA_034928465.1	JAYFOY000000000	SAMN38932759	9L_10	Desulfovibrio desulfuricans
GCA_034933365.1	JAYFNQ000000000	SAMN38932725	3L_36	Dysgonamonadaceae bacterium
GCA_034928345.1	JAYFPA000000000	SAMN38932761	9L_40	Endomicrobiaceae bacterium
GCA_034926005.1	JAYFRM000000000	SAMN38932825	CA_87	Enterococcus thailandicus
GCA_034932905.1	JAYFOF000000000	SAMN38932740	5C_77	Erysipelotrichaceae bacterium
GCA_034932745.1	JAYFOJ000000000	SAMN38932744	5L_41	Erysipelotrichaceae bacterium
GCA_034932685.1	JAYFOM000000000	SAMN38932747	7C_38	Erysipelotrichaceae bacterium
GCA_034925695.1	JAYFRS000000000	SAMN38932831	CA_99_R1	Erysipelotrichales bacterium
GCA_034927505.1	JAYFPY000000000	SAMN38932785	CA_144	Eubacteriaceae bacterium
GCA_034933205.1	JAYFNY000000000	SAMN38932733	5C_59	Eubacteriales bacterium
GCA_034933125.1	JAYFOC000000000	SAMN38932737	5C_69	Eubacteriales bacterium
GCA_034932865.1	JAYFOI000000000	SAMN38932743	5L_23	Eubacterium aggregans
GCA_034933285.1	JAYFNT000000000	SAMN38932728	5C_26	Geobacteraceae bacterium
GCA_034932485.1	JAYFOQ000000000	SAMN38932751	7L_13	Gordonibacter sp.
GCA_034933685.1	JAYFNB000000000	SAMN38932710	3C_1	Lachnospiraceae bacterium
GCA_034925905.1	JAYFRL000000000	SAMN38932824	CA_85	Lachnospiraceae bacterium
GCA_034927465.1	JAYFPV000000000	SAMN38932782	CA_137_R1	Lawsonibacter sp.
GCA_034933425.1	JAYFNN000000000	SAMN38932722	3L_22	Lentimicrobium sp.
GCA_034928025.1	JAYFPJ000000000	SAMN38932770	CA_116	Lutispora sp.
GCA_034925745.1	JAYFRR000000000	SAMN38932830	CA_98	Macellibacteroides fermentans
GCA_034928265.1	JAYFPD000000000	SAMN38932764	CA_10	Methanobrevibacter sp.
GCA_034932965.1	JAYFOG000000000	SAMN38932741	5L_17	Methanocorpusculum sp.
GCA_034933645.1	JAYFNC000000000	SAMN38932711	3C_15	Methanocorpusculum sp.
GCA_034928305.1	JAYFOZ000000000	SAMN38932760	9L_3	Methanomassiliicoccaceae archaeon
GCA_034932505.1	JAYFOR000000000	SAMN38932752	7L_19_R1	Oscillibacter ruminantium
GCA_034933545.1	JAYFNH000000000	SAMN38932716	3C_45	Oscillibacter sp.
GCA_034928525.1	JAYFOW000000000	SAMN38932757	9C_38	Oscillibacter sp.
GCA_034927195.1	JAYFQL000000000	SAMN38932798	CA_184	Oscillibacter sp.
GCA_034927185.1	JAYFQM000000000	SAMN38932799	CA_188_R1	Oscillospiraceae bacterium
GCA_034927165.1	JAYFQJ000000000	SAMN38932796	CA_18	Oscillospiraceae bacterium
GCA_034925865.1	JAYFRN000000000	SAMN38932826	CA_90	Oscillospiraceae bacterium
GCA_034926415.1	JAYFRC000000000	SAMN38932815	CA_63	Oscillospiraceae bacterium
GCA_034927585.1	JAYFPS000000000	SAMN38932779	CA_133	Oscillospiraceae bacterium
GCA_034927685.1	JAYFPO000000000	SAMN38932775	CA_120	Oscillospiraceae bacterium
GCA_034933465.1	JAYFNM000000000	SAMN38932721	3L_19	Oscillospiraceae bacterium
GCA_034933305.1	JAYFNU000000000	SAMN38932729	5C_30	Oscillospiraceae bacterium
GCA_034928015.1	JAYFPF000000000	SAMN38932766	CA_102	Paludibacter sp.
GCA_034928085.1	JAYFPG000000000	SAMN38932767	CA_107	Paludibacter sp.
GCA_034926015.1	JAYFRI000000000	SAMN38932821	CA_72	Paludibacter sp.
GCA_034927265.1	JAYFQH000000000	SAMN38932794	CA_177	Paludibacter sp.
GCA_034927635.1	JAYFPP000000000	SAMN38932776	CA_125	Paludibacter sp.
GCA_034927285.1	JAYFQF000000000	SAMN38932792	CA_17	Peptococcaceae bacterium
GCA_034927425.1	JAYFQA000000000	SAMN38932787	CA_146_R1	Petrimonas sp.
GCA_034928255.1	JAYFPB000000000	SAMN38932762	9L_4_R1	Petrimonas sp.
GCA_034928555.1	JAYFOX000000000	SAMN38932758	9C_52_R1	Petrimonas sp.
GCA_034928755.1	JAYFOT000000000	SAMN38932754	7L_36	Petrimonas sp.
GCA_034933105.1	JAYFOB000000000	SAMN38932736	5C_68_R1	Petrimonas sp.
GCA_034932925.1	JAYFOH000000000	SAMN38932742	5L_21_R1	Petrimonas sp.
GCA_034932725.1	JAYFOK000000000	SAMN38932745	7C_23_R1	Petrimonas sp.
GCA_034933485.1	JAYFNK000000000	SAMN38932719	3L_17	Propionibacterium sp.
GCA_034933605.1	JAYFNE000000000	SAMN38932713	3C_28	Propionicimonas sp.
GCA_034932705.1	JAYFON000000000	SAMN38932748	7C_40	Propionicimonas sp.
GCA_034927565.1	JAYFPT000000000	SAMN38932780	CA_134	Propionicimonas sp.
GCA_034927365.1	JAYFQD000000000	SAMN38932790	CA_158	Proteiniphilum sp.
GCA_034933325.1	JAYFNR000000000	SAMN38932726	3L_46	Proteiniphilum sp.
GCA_034927965.1	JAYFPI000000000	SAMN38932769	CA_115	Pseudoflavonifractor sp.
GCA_034933565.1	JAYFNG000000000	SAMN38932715	3C_43	Raineyella sp.
GCA_034926235.1	JAYFRE000000000	SAMN38932817	CA_67	Rhodospirillaceae bacterium
GCA_034926445.1	JAYFQY000000000	SAMN38932811	CA_44	Rikenellaceae bacterium
GCA_034928745.1	JAYFOS000000000	SAMN38932753	7L_34	Rikenellaceae bacterium
GCA_034933345.1	JAYFNS000000000	SAMN38932727	5C_10	Sedimentibacter saalensis
GCA_034933585.1	JAYFNF000000000	SAMN38932714	3C_40	Solidesulfovibrio sp.
GCA_034925665.1	JAYFRP000000000	SAMN38932828	CA_93	Solidesulfovibrio sp.
GCA_034933625.1	JAYFND000000000	SAMN38932712	3C_21	Sphaerochaeta associata
GCA_034932565.1	JAYFOP000000000	SAMN38932750	7L_10	Sphaerochaeta associata
GCA_034932785.1	JAYFOL000000000	SAMN38932746	7C_26	Sphaerochaeta sp.
GCA_034926535.1	JAYFQZ000000000	SAMN38932812	CA_53	Sphaerochaeta sp.
GCA_034925995.1	JAYFRJ000000000	SAMN38932822	CA_79_R1	Sphaerochaeta sp.
GCA_034926945.1	JAYFQQ000000000	SAMN38932803	CA_24_R1	Synergistaceae bacterium
GCA_034926665.1	JAYFQT000000000	SAMN38932806	CA_30	Synergistaceae bacterium
GCA_034927445.1	JAYFPZ000000000	SAMN38932786	CA_145	Syntrophomonadaceae bacterium
GCA_034926605.1	JAYFQV000000000	SAMN38932808	CA_40	Victivallaceae bacterium
GCA_034926145.1	JAYFRH000000000	SAMN38932820	CA_71	[Clostridium] scindens
GCA_034925815.1	JAYFRQ000000000	SAMN38932829	CA_96	[Clostridium] symbiosum

SRA Data Details

Parameter	Value
Data volume, Gbases	334
Data volume, Tbytes	0.11

BioProject

Result Filters

Display Settings:

Send to:

Links from BioSample

Metagenomes and metatranscriptomes from tetrachloroethene-dechlorinating consortium SDC-9 growing in the presence and absence of biochar

Supplemental Content

Related information

Recent activity