coral metagenome (ID 545004) - BioProject

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Accession: PRJNA545004 ID: 545004

coral metagenome

coral metagenome Genome sequencing

The goal of this project is to produce microbial metagenomes from corals to better understand how coral-associated microbes interact with their host.

Accession	PRJNA545004
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	coral metagenome[Taxonomy ID: 496922] unclassified sequences; metagenomes; organismal metagenomes; coral metagenome
Publications	Robbins SJ et al., "A genomic view of the reef-building coral Porites lutea and its microbial symbionts.", Nat Microbiol, 2019 Dec;4(12):2090-2100 Published online: Messer L et al., "The microbiome of the branching coral Acropora kenti", Research Square, 2023;
Submission	Registration date: 9-Apr-2020 Australian Centre for Ecogenomics
Related Resources	MAGs are also hosted at reefgenomics.org

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	109
SRA Experiments	51
Publications
PubMed	1
Other datasets
BioSample	154
Assembly	109

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

108
1
109

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_012270245.1	JAAXIQ000000000	SAMN12098000	SW22112_bin_2	Acidimicrobiaceae bacterium
GCA_012269985.1	JAAXJF000000000	SAMN12097998	SW22112_bin_9	Acidimicrobiaceae bacterium
GCA_012269445.1	JAAXKG000000000	SAMN12097999	SW42618_bin_6	Acidimicrobiaceae bacterium
GCA_012270885.1	JAAXHN000000000	SAMN12097952	Plut_88890	Acidimicrobiia bacterium
GCA_012267485.1	JAAXGL000000000	SAMN12097946	Plut_88862	Acidobacteriota bacterium
GCA_012271125.1	JAAXHB000000000	SAMN12097953	Plut_88878	Actinomycetota bacterium
GCA_012269475.1	JAAXKE000000000	SAMN12098022	SW42618_bin_38	Alphaproteobacteria bacterium
GCA_012269465.1	JAAXKF000000000	SAMN12098027	SW42618_bin_5	Alphaproteobacteria bacterium
GCA_012269375.1	JAAXKJ000000000	SAMN12098023	SW42618_bin_9	Alphaproteobacteria bacterium
GCA_012267605.1	JAAXGF000000000	SAMN12097987	Plut_88856	Alphaproteobacteria bacterium
GCA_012269685.1	JAAXJT000000000	SAMN12098024	SW42618_bin_10	Alphaproteobacteria bacterium
GCA_012269555.1	JAAXKA000000000	SAMN12098021	SW42618_bin_29	Alphaproteobacteria bacterium
GCA_012269885.1	JAAXJK000000000	SAMN12098026	SW42616_bin_2	Alphaproteobacteria bacterium
GCA_012270035.1	JAAXJA000000000	SAMN12098025	SW22112_bin_4	Alphaproteobacteria bacterium
GCA_012270115.1	JAAXIZ000000000	SAMN12098036	SW22112_bin_3	Alteromonas sp.
GCA_012270765.1	JAAXHS000000000	SAMN12097959	Plut_88895	Anaerolineae bacterium
GCA_012270545.1	JAAXID000000000	SAMN12097960	Plut_88906	Anaerolineae bacterium
GCA_012270255.1	JAAXIS000000000	SAMN12098002	SW22112_bin_21	Bacteroidota bacterium
GCA_012270135.1	JAAXIW000000000	SAMN12098019	SW22112_bin_27	Brevundimonas sp.
GCA_012269935.1	JAAXJH000000000	SAMN12098020	SW42615_bin_2	Brevundimonas sp.
GCA_012267525.1	JAAXGJ000000000	SAMN12097947	Plut_88860	Bryobacterales bacterium
GCA_012270735.1	JAAXHT000000000	SAMN12097948	Plut_88896	Bryobacterales bacterium
GCA_012271135.1	JAAXGZ000000000	SAMN12097958	Plut_88876	Caldilineales bacterium
GCA_012270825.1	JAAXHQ000000000	SAMN12097971	Plut_88893	Candidatus Dadabacteria bacterium
GCA_012270975.1	JAAXHH000000000	SAMN12097976	Plut_88884	Candidatus Latescibacterota bacterium
GCA_012271065.1	JAAXHE000000000	SAMN12097977	Plut_88881	Candidatus Latescibacterota bacterium
GCA_012270675.1	JAAXHW000000000	SAMN12097978	Plut_88899	Candidatus Latescibacterota bacterium
GCA_012270185.1	JAAXIV000000000	SAMN12098013	SW22112_bin_26	Candidatus Neomarinimicrobiota bacterium
GCA_012270965.1	JAAXHJ000000000	SAMN12097974	Plut_88886	Candidatus Palauibacter poriticola
GCA_012271015.1	JAAXHD000000000	SAMN12097983	Plut_88880	Candidatus Poribacteria bacterium
GCA_012270875.1	JAAXHI000000000	SAMN12097984	Plut_88885	Candidatus Poribacteria bacterium
GCA_012270865.1	JAAXHL000000000	SAMN12097985	Plut_88888	Candidatus Poribacteria bacterium
GCA_012271095.1	JAAXHC000000000	SAMN12097982	Plut_88879	Candidatus Poribacteria bacterium
GCA_012270795.1	JAAXHO000000000	SAMN12097986	Plut_88891	Candidatus Poribacteria bacterium
GCA_012267415.1	JAAXGN000000000	SAMN12097981	Plut_88864	Candidatus Poribacteria bacterium
GCA_012267575.1	JAAXGG000000000	SAMN12097980	Plut_88857	Candidatus Poribacteria bacterium
GCA_012269645.1	JAAXJW000000000	SAMN12097996	SW42618_bin_18	Candidatus Poseidoniales archaeon
GCA_012270265.1	JAAXIR000000000	SAMN12097997	SW22112_bin_20	Candidatus Poseidoniales archaeon
GCA_012270305.1	JAAXIO000000000	SAMN12098014	SW22112_bin_18	Candidatus Saccharibacteria bacterium
GCA_012270555.1	JAAXIC000000000	SAMN12097957	Plut_88905	Chloroflexota bacterium
GCA_012269835.1	JAAXJN000000000	SAMN12098031	SW42617_bin_11	Croceicoccus sp.
GCA_012267405.1	JAAXGU000000000	SAMN12097966	Plut_88871	Dehalococcoidia bacterium
GCA_012267325.1	JAAXGY000000000	SAMN12097968	Plut_88875	Dehalococcoidia bacterium
GCA_012270525.1	JAAXIE000000000	SAMN12097970	Plut_88907	Dehalococcoidia bacterium
GCA_012270665.1	JAAXHY000000000	SAMN12097964	Plut_88901	Dehalococcoidia bacterium
GCA_012270635.1	JAAXHX000000000	SAMN12097962	Plut_88900	Dehalococcoidia bacterium
GCA_012270625.1	JAAXHZ000000000	SAMN12097965	Plut_88902	Dehalococcoidia bacterium
GCA_012270725.1	JAAXHU000000000	SAMN12097969	Plut_88897	Dehalococcoidia bacterium
GCA_012271215.1	JAAXGR000000000	SAMN12097963	Plut_88868	Dehalococcoidia bacterium
GCA_012270805.1	JAAXHR000000000	SAMN12097967	Plut_88894	Dehalococcoidia bacterium
GCA_012271225.1	JAAXGS000000000	SAMN12097961	Plut_88869	Dehalococcoidia bacterium
GCA_012271025.1	JAAXHF000000000	SAMN12097995	Plut_88882	Deltaproteobacteria bacterium
GCA_012269845.1	JAAXJL000000000	SAMN12098049	SW42616_bin_7	Deltaproteobacteria bacterium
GCA_012267535.1	JAAXGH000000000	SAMN12097994	Plut_88858	Deltaproteobacteria bacterium
GCA_012269725.1	JAAXJS000000000	SAMN12098050	SW42617_bin_9	Deltaproteobacteria bacterium
GCA_012267545.1	JAAXGK000000000	SAMN12097988	Plut_88861	Endozoicomonadaceae bacterium
GCA_012269825.1	JAAXJM000000000	SAMN12098034	SW42617_bin_1	Erythrobacter sp.
GCA_012269915.1	JAAXJI000000000	SAMN12098033	SW42615_bin_6	Erythrobacter sp.
GCA_012270475.1	JAAXIG000000000	SAMN12098032	SW22112_bin_10	Erythrobacter sp.
GCA_012269625.1	JAAXJY000000000	SAMN12098008	SW42618_bin_20	Flavobacteriaceae bacterium
GCA_012269955.1	JAAXJG000000000	SAMN12098007	SW42615_bin_16	Flavobacteriaceae bacterium
GCA_012270315.1	JAAXIP000000000	SAMN12098009	SW22112_bin_19	Flavobacteriales bacterium
GCA_012270225.1	JAAXIT000000000	SAMN12098003	SW22112_bin_22	Flavobacteriales bacterium
GCA_012269755.1	JAAXJQ000000000	SAMN12098004	SW42617_bin_6	Flavobacteriales bacterium
GCA_012269745.1	JAAXJR000000000	SAMN12098005	SW42617_bin_7	Flavobacteriales bacterium
GCA_012270005.1	JAAXJD000000000	SAMN12098006	SW22112_bin_7	Flavobacterium sp.
GCA_012269545.1	JAAXKB000000000	SAMN12098043	SW42618_bin_3	Gammaproteobacteria bacterium
GCA_012269405.1	JAAXKI000000000	SAMN12098046	SW42618_bin_8	Gammaproteobacteria bacterium
GCA_012269365.1	JAAXKH000000000	SAMN12098047	SW42618_bin_60	Gammaproteobacteria bacterium
GCA_012270425.1	JAAXIJ000000000	SAMN12098048	SW22112_bin_13	Gammaproteobacteria bacterium
GCA_012270695.1	JAAXHV000000000	SAMN12097992	Plut_88898	Gammaproteobacteria bacterium
GCA_012270915.1	JAAXHM000000000	SAMN12097991	Plut_88889	Gammaproteobacteria bacterium
GCA_012270935.1	JAAXHK000000000	SAMN12097975	Plut_88887	Gemmatimonadota bacterium
GCA_012267505.1	JAAXGI000000000	SAMN12097972	Plut_88859	Gemmatimonadota bacterium
GCA_012267435.1	JAAXGM000000000	SAMN12097973	Plut_88863	Gemmatimonadota bacterium
GCA_012270375.1	JAAXIM000000000	SAMN12098042	SW22112_bin_16	Halomonas sp.
GCA_012270025.1	JAAXJE000000000	SAMN12098035	SW22112_bin_8	Limnobacter sp.
GCA_012269585.1	JAAXJZ000000000	SAMN12098044	SW42618_bin_25	Litorivicinus sp.
GCA_012269495.1	JAAXKC000000000	SAMN12098041	SW42618_bin_33	Luminiphilus sp.
GCA_012270045.1	JAAXJC000000000	SAMN12098040	SW22112_bin_6	Luminiphilus sp.
GCA_012271085.1	JAAXHA000000000	SAMN12097945	Plut_88877	Nitrosopumilaceae archaeon
GCA_012271275.1	JAAXGP000000000	SAMN12097944	Plut_88866	Nitrosopumilaceae archaeon
GCA_012270585.1	JAAXIB000000000	SAMN12097979	Plut_88904	Nitrospirales bacterium
GCA_012270775.1	JAAXHP000000000	SAMN12097990	Plut_88892	OMG group bacterium
GCA_012267385.1	JAAXGW000000000	SAMN12097989	Plut_88873	OMG group bacterium
GCA_012269485.1	JAAXKD000000000	SAMN12098028	SW42618_bin_36	Paracoccaceae bacterium
GCA_012270105.1	JAAXIX000000000	SAMN12098029	SW22112_bin_28	Paracoccaceae bacterium
GCA_012270125.1	JAAXIY000000000	SAMN12098030	SW22112_bin_29	Paracoccaceae bacterium
GCA_012270345.1	JAAXIN000000000	SAMN12098017	SW22112_bin_17	Planctomycetaceae bacterium
GCA_012269595.1	JAAXJX000000000	SAMN12098018	SW42618_bin_2	Planctomycetia bacterium
GCA_012270435.1	JAAXII000000000	SAMN12098037	SW22112_bin_12	Pseudoalteromonas sp.
GCA_012269655.1	JAAXJV000000000	SAMN12098039	SW42618_bin_16	Pseudomonadales bacterium
GCA_012269785.1	JAAXJO000000000	SAMN12098038	SW42617_bin_18	Pseudomonadales bacterium
GCA_012270355.1	JAAXIL000000000	SAMN12098045	SW22112_bin_15	Psychrobacter sp.
GCA_012270595.1	JAAXIA000000000	SAMN12097993	Plut_88903	Rhodanobacteraceae bacterium
GCA_012271185.1	JAAXGV000000000	SAMN12097956	Plut_88872	Rhodothermales bacterium
GCA_012271205.1	JAAXGT000000000	SAMN12097955	Plut_88870	Rhodothermales bacterium
GCA_012267425.1	JAAXGO000000000	SAMN12097954	Plut_88865	Rhodothermales bacterium
GCA_012270385.1	JAAXIK000000000	SAMN12098015	SW22112_bin_14	Rubripirellula sp.
GCA_012270065.1	JAAXJB000000000	SAMN12098016	SW22112_bin_5	Rubripirellula sp.
GCA_012269805.1	JAAXJP000000000	SAMN12098010	SW42617_bin_3	Rubrivirga sp.
GCA_012270485.1	JAAXIF000000000	SAMN12098001	SW22112_bin_1	Sphingobacteriales bacterium
GCA_012269695.1	JAAXJU000000000	SAMN12098012	SW42618_bin_11	Synechococcus sp.
GCA_012270465.1	JAAXIH000000000	SAMN12098011	SW22112_bin_11	Synechococcus sp.
GCA_012269905.1	JAAXJJ000000000	SAMN12098051	SW42616_bin_15	Verrucomicrobiales bacterium
GCA_012270205.1	JAAXIU000000000	SAMN12098052	SW22112_bin_25	Verrucomicrobiales bacterium
GCA_012271165.1	JAAXGX000000000	SAMN12097950	Plut_88874	Vicinamibacteraceae bacterium
GCA_012270995.1	JAAXHG000000000	SAMN12097951	Plut_88883	Vicinamibacteraceae bacterium
GCA_012271265.1	JAAXGQ000000000	SAMN12097949	Plut_88867	Vicinamibacteraceae bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	811
Data volume, Tbytes	0.43

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coral metagenome

coral metagenome Genome sequencing

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