ID 1013894 - BioProject

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Accession: PRJEB65870 ID: 1013894

EMG produced TPA metagenomics assembly of PRJNA679884 data set (Interstitial Cystitis Urinary Metagenomics).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA679884, and was assembled with metaspades v3. More...

Accession	PRJEB65870
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "MGnify: the microbiome analysis resource in 2020.", Nucleic Acids Res, 2020 Jan 8;48(D1):D570-D578
Submission	Registration date: 7-Sep-2023 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1459
WGS master	31
Publications
PubMed	1
PMC	1
Other datasets
BioSample	31
Assembly	31

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

31
31

Assembly	WGS	BioSample	Taxonomy
GCA_963513275.1	CAUPQJ000000000	SAMEA114402914	Actinobaculum massiliense
GCA_963512765.1	CAUPNF000000000	SAMEA114402911	Anaeroglobus geminatus
GCA_963512635.1	CAUPND000000000	SAMEA114402918	Enterococcus faecalis
GCA_963512565.1	CAUPNK000000000	SAMEA114402920	Escherichia coli
GCA_963513095.1	CAUPPF000000000	SAMEA114402924	Fannyhessea vaginae
GCA_963513445.1	CAUPQD000000000	SAMEA114402927	Gardnerella vaginalis
GCA_963512885.1	CAUPOG000000000	SAMEA114402934	Gardnerella vaginalis
GCA_963513205.1	CAUPPT000000000	SAMEA114402932	Gardnerella vaginalis
GCA_963512625.1	CAUPNR000000000	SAMEA114402910	Hoylesella buccalis
GCA_963513145.1	CAUPPO000000000	SAMEA114402916	Hoylesella timonensis
GCA_963513315.1	CAUPQC000000000	SAMEA114402917	Klebsiella pneumoniae
GCA_963513285.1	CAUPQH000000000	SAMEA114402940	Lactobacillus crispatus
GCA_963513175.1	CAUPPE000000000	SAMEA114402926	Lactobacillus gasseri
GCA_963512915.1	CAUPOH000000000	SAMEA114402922	Lactobacillus iners
GCA_963513365.1	CAUPQA000000000	SAMEA114402919	Lactobacillus jensenii
GCA_963512945.1	CAUPOJ000000000	SAMEA114402921	Morganella morganii
GCA_963513035.1	CAUPPA000000000	SAMEA114402930	Prevotella bivia
GCA_963513245.1	CAUPPP000000000	SAMEA114402923	Scardovia wiggsiae
GCA_963513225.1	CAUPPJ000000000	SAMEA114402931	Sneathia sanguinegens
GCA_963512825.1	CAUPOK000000000	SAMEA114402938	Streptococcus anginosus
GCA_963513005.1	CAUPOX000000000	SAMEA114402935	uncultured Anaerococcus sp.
GCA_963513075.1	CAUPPX000000000	SAMEA114402925	uncultured Bifidobacterium sp.
GCA_963513345.1	CAUPPY000000000	SAMEA114402913	uncultured Candidatus Saccharibacteria bacterium
GCA_963513195.1	CAUPQQ000000000	SAMEA114402933	uncultured Citrobacter sp.
GCA_963512535.1	CAUPOE000000000	SAMEA114402912	uncultured Delftia sp.
GCA_963513115.1	CAUPPN000000000	SAMEA114402937	uncultured Eubacteriales bacterium
GCA_963512835.1	CAUPOO000000000	SAMEA114402929	uncultured Eubacteriales bacterium
GCA_963513135.1	CAUPPK000000000	SAMEA114402928	uncultured Megasphaera sp.
GCA_963513045.1	CAUPOQ000000000	SAMEA114402939	uncultured Parvimonas sp.
GCA_963513105.1	CAUPPQ000000000	SAMEA114402915	uncultured Prevotella sp.
GCA_963512965.1	CAUPOI000000000	SAMEA114402936	uncultured Veillonellaceae bacterium

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EMG produced TPA metagenomics assembly of PRJNA679884 data set (Interstitial Cystitis Urinary Metagenomics).

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