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Accession: PRJEB55657 ID: 875855

EMG produced TPA metagenomics assembly of PRJNA576566 data set (metagenomic studies of vaginal microbiome in HPV16 infection).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA576566, and was assembled with metaSPAdes v3. More...
AccessionPRJEB55657
Data TypeGenome sequencing and assembly
ScopeMonoisolate
KeywordTPA:assembly
PublicationsMitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
SubmissionRegistration date: 1-Sep-2022
EMG
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)3117
WGS master71
Publications
PubMed1
PMC1
Other datasets
BioSample71
Assembly71
Assembly details:
Assembly levelNumber of Assemblies
71
71
AssemblyLevelWGSBioSampleTaxonomy
GCA_947090555.1ContigCAMUOX000000000SAMEA111491458
GCA_947089795.1ContigCAMULK000000000SAMEA111491453
GCA_947087635.1ContigCAMUDP000000000SAMEA111491501
GCA_947087005.1ContigCAMUAY000000000SAMEA111491497
GCA_947086705.1ContigCAMTZZ000000000SAMEA111491452
GCA_947090205.1ContigCAMUNF000000000SAMEA111491461
GCA_947090055.1ContigCAMUMY000000000SAMEA111491481
GCA_947087705.1ContigCAMUDK000000000SAMEA111491483
GCA_947090015.1ContigCAMUMF000000000SAMEA111491476
GCA_947090325.1ContigCAMUNV000000000SAMEA111491477
GCA_947090285.1ContigCAMUNO000000000SAMEA111491478
GCA_947090035.1ContigCAMUMH000000000SAMEA111491467
GCA_947086555.1ContigCAMTZD000000000SAMEA111491489
GCA_947090655.1ContigCAMUOO000000000SAMEA111491464
GCA_947089705.1ContigCAMULJ000000000SAMEA111491451
GCA_947090665.1ContigCAMUOP000000000SAMEA111491457
GCA_947086935.1ContigCAMUAP000000000SAMEA111491488
GCA_947086515.1ContigCAMTZE000000000SAMEA111491479
GCA_947086695.1ContigCAMTZH000000000SAMEA111491484
GCA_947087835.1ContigCAMUEF000000000SAMEA111491521
GCA_947086835.1ContigCAMUAE000000000SAMEA111491480
GCA_947090395.1ContigCAMUNW000000000SAMEA111491475
GCA_947089995.1ContigCAMULZ000000000SAMEA111491471
GCA_947087355.1ContigCAMUCE000000000SAMEA111491520
GCA_947087755.1ContigCAMUDV000000000SAMEA111491517
GCA_947087235.1ContigCAMUBW000000000SAMEA111491493
GCA_947087675.1ContigCAMUDJ000000000SAMEA111491465
GCA_947090355.1ContigCAMUNX000000000SAMEA111491472
GCA_947089195.1ContigCAMUJJ000000000SAMEA111491508
GCA_947090065.1ContigCAMUMT000000000SAMEA111491502
GCA_947090595.1ContigCAMUOS000000000SAMEA111491454
GCA_947090405.1ContigCAMUNS000000000SAMEA111491470
GCA_947086575.1ContigCAMTZK000000000SAMEA111491500
GCA_947087775.1ContigCAMUDY000000000SAMEA111491519
GCA_947089735.1ContigCAMULN000000000SAMEA111491455
GCA_947087115.1ContigCAMUBN000000000SAMEA111491496
GCA_947087655.1ContigCAMUDT000000000SAMEA111491492
GCA_947086745.1ContigCAMUAD000000000SAMEA111491463
GCA_947089185.1ContigCAMUJK000000000SAMEA111491482
GCA_947087255.1ContigCAMUCA000000000SAMEA111491505
GCA_947090115.1ContigCAMUMS000000000SAMEA111491506
GCA_947087045.1ContigCAMUBA000000000SAMEA111491494
GCA_947087685.1ContigCAMUDH000000000SAMEA111491486
GCA_947090525.1ContigCAMUON000000000SAMEA111491469
GCA_947090645.1ContigCAMUOQ000000000SAMEA111491507
GCA_947087645.1ContigCAMUDN000000000SAMEA111491491
GCA_947090385.1ContigCAMUNZ000000000SAMEA111491473
GCA_947090635.1ContigCAMUOM000000000SAMEA111491515
GCA_947087615.1ContigCAMUDO000000000SAMEA111491498
GCA_947087155.1ContigCAMUBJ000000000SAMEA111491509
GCA_947090005.1ContigCAMUMA000000000SAMEA111491462
GCA_947086715.1ContigCAMTZX000000000SAMEA111491466
GCA_947086735.1ContigCAMTZW000000000SAMEA111491456
GCA_947086605.1ContigCAMTZG000000000SAMEA111491504
GCA_947090145.1ContigCAMUNE000000000SAMEA111491514
GCA_947090375.1ContigCAMUOC000000000SAMEA111491485
GCA_947086535.1ContigCAMTZL000000000SAMEA111491510
GCA_947088155.1ContigCAMUFL000000000SAMEA111491512
GCA_947086975.1ContigCAMUAW000000000SAMEA111491495
GCA_947086635.1ContigCAMTZF000000000SAMEA111491516
GCA_947089935.1ContigCAMULY000000000SAMEA111491468
GCA_947090275.1ContigCAMUNR000000000SAMEA111491487
GCA_947086955.1ContigCAMUAK000000000SAMEA111491474
GCA_947087535.1ContigCAMUDA000000000SAMEA111491511
GCA_947090515.1ContigCAMUOR000000000SAMEA111491460
GCA_947087965.1ContigCAMUES000000000SAMEA111491518
GCA_947086565.1ContigCAMTZN000000000SAMEA111491499
GCA_947087665.1ContigCAMUDR000000000SAMEA111491490
GCA_947087765.1ContigCAMUDZ000000000SAMEA111491513
GCA_947087525.1ContigCAMUDC000000000SAMEA111491459
GCA_947087625.1ContigCAMUDQ000000000SAMEA111491503

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