ID 855824 - BioProject

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Accession: PRJEB54039 ID: 855824

EMG produced TPA metagenomics assembly of PRJEB37382 data set (Assessment of different methods for library preparation of human vaginal samples).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJEB37382, and was assembled with metaSPAdes v3. More...

Accession	PRJEB54039
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 5-Jul-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1062
WGS master	28
Publications
PubMed	1
PMC	1
Other datasets
BioSample	28
Assembly	28

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

28
28

Assembly	WGS	BioSample	Taxonomy
GCA_947039085.1	CAMQXX000000000	SAMEA111428904	Dialister micraerophilus
GCA_947041595.1	CAMREF000000000	SAMEA111428898	Gardnerella vaginalis
GCA_947038465.1	CAMQWC000000000	SAMEA111428897	Gardnerella vaginalis
GCA_947040055.1	CAMRAG000000000	SAMEA111428882	Gardnerella vaginalis
GCA_947039325.1	CAMQYP000000000	SAMEA111428886	Hallella colorans
GCA_947041285.1	CAMRDE000000000	SAMEA111428902	Hoylesella timonensis
GCA_947041275.1	CAMRDG000000000	SAMEA111428896	Lactobacillus crispatus
GCA_947036755.1	CAMQRM000000000	SAMEA111428883	Lactobacillus iners
GCA_947038375.1	CAMQWA000000000	SAMEA111428888	Mageeibacillus indolicus
GCA_947038395.1	CAMQVW000000000	SAMEA111428880	Metamycoplasma hominis
GCA_947041955.1	CAMREW000000000	SAMEA111428894	Prevotella amnii
GCA_947041195.1	CAMRDC000000000	SAMEA111428881	Prevotella bivia
GCA_947038415.1	CAMQWE000000000	SAMEA111428885	Prevotella disiens
GCA_947038685.1	CAMQWM000000000	SAMEA111428903	Veillonella montpellierensis
GCA_947039465.1	CAMQYX000000000	SAMEA111428887	uncultured Atopobium sp.
GCA_947039045.1	CAMQXV000000000	SAMEA111428901	uncultured Atopobium sp.
GCA_947036515.1	CAMQRP000000000	SAMEA111428890	uncultured Clostridia bacterium
GCA_947036965.1	CAMQSS000000000	SAMEA111428905	uncultured Clostridia bacterium
GCA_947038425.1	CAMQVX000000000	SAMEA111428900	uncultured Coriobacteriales bacterium
GCA_947038475.1	CAMQWF000000000	SAMEA111428891	uncultured Gardnerella sp.
GCA_947039925.1	CAMRAD000000000	SAMEA111428892	uncultured Lachnospiraceae bacterium
GCA_947039735.1	CAMQZS000000000	SAMEA111428879	uncultured Megasphaera sp.
GCA_947038385.1	CAMQWG000000000	SAMEA111428889	uncultured Porphyromonas sp.
GCA_947037765.1	CAMQUJ000000000	SAMEA111428893	uncultured Prevotella sp.
GCA_947037015.1	CAMQSW000000000	SAMEA111428895	uncultured Prevotella sp.
GCA_947038995.1	CAMQXU000000000	SAMEA111428884	uncultured Sneathia sp.
GCA_947039915.1	CAMRAE000000000	SAMEA111428906	uncultured Sneathia sp.
GCA_947042085.1	CAMREX000000000	SAMEA111428899	uncultured Veillonellaceae bacterium

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EMG produced TPA metagenomics assembly of PRJEB37382 data set (Assessment of different methods for library preparation of human vaginal samples).

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