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Accession: PRJEB53599 ID: 850256

EMG produced TPA metagenomics assembly of PRJNA779415 data set (Vaginal microbiome of reproductive age mother daughter pairs).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA779415, and was assembled with metaSPAdes v3. More...
AccessionPRJEB53599
Data TypeGenome sequencing and assembly
ScopeMonoisolate
KeywordTPA:assembly
PublicationsMitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
SubmissionRegistration date: 17-Jun-2022
EMG
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)5414
WGS master130
Publications
PubMed1
PMC1
Other datasets
BioSample130
Assembly130
Assembly details:
Assembly levelNumber of Assemblies
Contig Contig
Total
130
130
AssemblyLevelWGSBioSampleTaxonomy
GCA_946998395.1ContigCAMPZB000000000SAMEA111388660
Acinetobacter nosocomialis
GCA_946999065.1ContigCAMQBS000000000SAMEA111388715
Actinobaculum massiliense
GCA_946998965.1ContigCAMQBH000000000SAMEA111388630
Actinomyces culturomici
GCA_946999835.1ContigCAMQER000000000SAMEA111388623
Aedoeadaptatus coxii
GCA_946999965.1ContigCAMQFA000000000SAMEA111388627
Aerococcus christensenii
GCA_946999285.1ContigCAMQCN000000000SAMEA111388725
Anaerococcus hydrogenalis
GCA_946998885.1ContigCAMQAX000000000SAMEA111388641
Anaerococcus senegalensis
GCA_946997125.1ContigCAMPUE000000000SAMEA111388628
Anaerococcus tetradius
GCA_946999935.1ContigCAMQFE000000000SAMEA111388625
Anaerococcus vaginalis
GCA_946997595.1ContigCAMPVP000000000SAMEA111388637
Atopobium deltae
GCA_946998795.1ContigCAMQAT000000000SAMEA111388635
Bifidobacterium breve
GCA_946997585.1ContigCAMPVS000000000SAMEA111388697
Brevibacterium ravenspurgense
GCA_946997675.1ContigCAMPWA000000000SAMEA111388716
Campylobacter ureolyticus
GCA_946998765.1ContigCAMQAO000000000SAMEA111388631
Candidatus Malacoplasma girerdii
GCA_946999135.1ContigCAMQBZ000000000SAMEA111388698
Corynebacterium riegelii
GCA_946999455.1ContigCAMQDD000000000SAMEA111388744
Dialister micraerophilus
GCA_946997475.1ContigCAMPWN000000000SAMEA111388734
Escherichia coli
GCA_947000085.1ContigCAMQFL000000000SAMEA111388624
Ezakiella massiliensis
GCA_946997825.1ContigCAMPWK000000000SAMEA111388642
Finegoldia magna
GCA_946997625.1ContigCAMPVV000000000SAMEA111388727
Fusobacterium gonidiaformans
GCA_946999255.1ContigCAMQCK000000000SAMEA111388688
Gardnerella vaginalis
GCA_946997205.1ContigCAMPUI000000000SAMEA111388731
Gardnerella vaginalis
GCA_946997215.1ContigCAMPUL000000000SAMEA111388680
Gardnerella vaginalis
GCA_946997745.1ContigCAMPXE000000000SAMEA111388721
Gardnerella vaginalis
GCA_946997835.1ContigCAMPWZ000000000SAMEA111388657
Gardnerella vaginalis
GCA_946998015.1ContigCAMPWO000000000SAMEA111388648
Gardnerella vaginalis
GCA_946998055.1ContigCAMPWR000000000SAMEA111388646
Gardnerella vaginalis
GCA_946999875.1ContigCAMQES000000000SAMEA111388733
Gardnerella vaginalis
GCA_946998415.1ContigCAMPZA000000000SAMEA111388652
Gardnerella vaginalis
GCA_946999095.1ContigCAMQBT000000000SAMEA111388665
Gardnerella vaginalis
GCA_946999335.1ContigCAMQCR000000000SAMEA111388735
Gardnerella vaginalis
GCA_946997065.1ContigCAMPTZ000000000SAMEA111388690
Gemelliphila asaccharolytica
GCA_946998075.1ContigCAMPWI000000000SAMEA111388661
Haemophilus parainfluenzae
GCA_946997955.1ContigCAMPWS000000000SAMEA111388712
Hallella colorans
GCA_946999265.1ContigCAMQCM000000000SAMEA111388691
Hoylesella buccalis
GCA_946998675.1ContigCAMQAB000000000SAMEA111388743
Hoylesella timonensis
GCA_947000095.1ContigCAMQFS000000000SAMEA111388629
Hoylesella timonensis
GCA_946998985.1ContigCAMQBN000000000SAMEA111388718
Jonquetella anthropi
GCA_946999165.1ContigCAMQCD000000000SAMEA111388717
Lactobacillus crispatus
GCA_946997765.1ContigCAMPXD000000000SAMEA111388732
Lactobacillus gasseri
GCA_946998945.1ContigCAMQBG000000000SAMEA111388695
Lactobacillus iners
GCA_946997055.1ContigCAMPTV000000000SAMEA111388640
Lactobacillus jensenii
GCA_946999415.1ContigCAMQDC000000000SAMEA111388736
Lactobacillus jensenii
GCA_946997755.1ContigCAMPVY000000000SAMEA111388639
Mageeibacillus indolicus
GCA_946998435.1ContigCAMPZE000000000SAMEA111388668
Metamycoplasma hominis
GCA_946997505.1ContigCAMPVM000000000SAMEA111388738
Mobiluncus curtisii
GCA_946997095.1ContigCAMPUA000000000SAMEA111388686
Mobiluncus mulieris
GCA_947000105.1ContigCAMQFR000000000SAMEA111388618
Oligella urethralis
GCA_946997995.1ContigCAMPXG000000000SAMEA111388632
Peptococcus niger
GCA_946999125.1ContigCAMQBW000000000SAMEA111388670
Peptoniphilus harei
GCA_946999085.1ContigCAMQBV000000000SAMEA111388649
Peptoniphilus lacrimalis
GCA_946998815.1ContigCAMQAP000000000SAMEA111388689
Peptoniphilus vaginalis
GCA_946998135.1ContigCAMPYD000000000SAMEA111388682
Peptostreptococcus anaerobius
GCA_946997265.1ContigCAMPUJ000000000SAMEA111388693
Porphyromonas uenonis
GCA_946999245.1ContigCAMQCF000000000SAMEA111388669
Prevotella amnii
GCA_946997545.1ContigCAMPVT000000000SAMEA111388724
Prevotella bivia
GCA_946997305.1ContigCAMPVB000000000SAMEA111388742
Prevotella disiens
GCA_946997865.1ContigCAMPXV000000000SAMEA111388746
Prevotella melaninogenica
GCA_946998065.1ContigCAMPXB000000000SAMEA111388713
Proteus mirabilis
GCA_946997575.1ContigCAMPWB000000000SAMEA111388702
Pseudoglutamicibacter albus
GCA_946997235.1ContigCAMPUK000000000SAMEA111388692
Sneathia sanguinegens
GCA_946998305.1ContigCAMPYX000000000SAMEA111388662
Staphylococcus epidermidis
GCA_946999105.1ContigCAMQBU000000000SAMEA111388659
Streptococcus agalactiae
GCA_946997225.1ContigCAMPUF000000000SAMEA111388676
Ureaplasma parvum
GCA_946997875.1ContigCAMPXP000000000SAMEA111388654
Veillonella montpellierensis
GCA_946998115.1ContigCAMPYB000000000SAMEA111388681
uncultured Actinomyces sp.
GCA_946997045.1ContigCAMPTU000000000SAMEA111388679
uncultured Arcanobacterium sp.
GCA_946997635.1ContigCAMPXH000000000SAMEA111388655
uncultured Atopobium sp.
GCA_946999055.1ContigCAMQBQ000000000SAMEA111388672
uncultured Atopobium sp.
GCA_946997185.1ContigCAMPUM000000000SAMEA111388678
uncultured Atopobium sp.
GCA_946997485.1ContigCAMPVF000000000SAMEA111388667
uncultured Atopobium sp.
GCA_946999785.1ContigCAMQEO000000000SAMEA111388730
uncultured Atopobium sp.
GCA_946998375.1ContigCAMPYV000000000SAMEA111388647
uncultured Atopobium sp.
GCA_946999645.1ContigCAMQDS000000000SAMEA111388747
uncultured Bacteroidales bacterium
GCA_946999855.1ContigCAMQET000000000SAMEA111388636
uncultured Bacteroidales bacterium
GCA_946997395.1ContigCAMPVD000000000SAMEA111388694
uncultured Bifidobacteriaceae bacterium
GCA_946999315.1ContigCAMQCS000000000SAMEA111388684
uncultured Bulleidia sp.
GCA_946999915.1ContigCAMQFB000000000SAMEA111388620
uncultured Campylobacter sp.
GCA_946997445.1ContigCAMPVA000000000SAMEA111388658
uncultured Candidatus Saccharibacteria bacterium
GCA_946997535.1ContigCAMPVQ000000000SAMEA111388663
uncultured Candidatus Saccharibacteria bacterium
GCA_946998385.1ContigCAMPYT000000000SAMEA111388653
uncultured Candidatus Saccharibacteria bacterium
GCA_946997405.1ContigCAMPVZ000000000SAMEA111388710
uncultured Clostridia bacterium
GCA_946998785.1ContigCAMQAU000000000SAMEA111388633
uncultured Clostridia bacterium
GCA_947000115.1ContigCAMQFT000000000SAMEA111388622
uncultured Clostridia bacterium
GCA_946999235.1ContigCAMQCO000000000SAMEA111388719
uncultured Clostridia bacterium
GCA_946997975.1ContigCAMPWU000000000SAMEA111388711
uncultured Clostridia bacterium
GCA_946997365.1ContigCAMPUW000000000SAMEA111388683
uncultured Clostridia bacterium
GCA_946998225.1ContigCAMPYH000000000SAMEA111388708
uncultured Clostridiaceae bacterium
GCA_946999215.1ContigCAMQCE000000000SAMEA111388722
uncultured Coriobacteriales bacterium
GCA_946997455.1ContigCAMPVK000000000SAMEA111388673
uncultured Coriobacteriales bacterium
GCA_946998805.1ContigCAMQAW000000000SAMEA111388643
uncultured Corynebacterium sp.
GCA_946997285.1ContigCAMPUP000000000SAMEA111388687
uncultured Corynebacterium sp.
GCA_946998835.1ContigCAMQAZ000000000SAMEA111388626
uncultured Corynebacterium sp.
GCA_946997525.1ContigCAMPVR000000000SAMEA111388675
uncultured Corynebacterium sp.
GCA_946997135.1ContigCAMPUH000000000SAMEA111388701
uncultured Dialister sp.
GCA_946998955.1ContigCAMQBI000000000SAMEA111388704
uncultured Facklamia sp.
GCA_946998895.1ContigCAMQBA000000000SAMEA111388696
uncultured Francisella sp.
GCA_946997805.1ContigCAMPWD000000000SAMEA111388644
uncultured Gardnerella sp.
GCA_946997415.1ContigCAMPVO000000000SAMEA111388634
uncultured Gordonibacter sp.
GCA_946998255.1ContigCAMPYN000000000SAMEA111388709
uncultured Helcococcus sp.
GCA_946999385.1ContigCAMQCZ000000000SAMEA111388740
uncultured Lachnoanaerobaculum sp.
GCA_946997855.1ContigCAMPWW000000000SAMEA111388656
uncultured Lachnospiraceae bacterium
GCA_946997335.1ContigCAMPUX000000000SAMEA111388737
uncultured Lactobacillus sp.
GCA_946997615.1ContigCAMPVW000000000SAMEA111388666
uncultured Megasphaera sp.
GCA_946998365.1ContigCAMPZD000000000SAMEA111388685
uncultured Megasphaera sp.
GCA_946998275.1ContigCAMPYQ000000000SAMEA111388671
uncultured Mobiluncus sp.
GCA_946998935.1ContigCAMQBE000000000SAMEA111388621
uncultured Mycoplasma sp.
GCA_946997905.1ContigCAMPXC000000000SAMEA111388714
uncultured Nosocomiicoccus sp.
GCA_946999805.1ContigCAMQEN000000000SAMEA111388726
uncultured Parvimonas sp.
GCA_946997035.1ContigCAMPTY000000000SAMEA111388705
uncultured Peptoniphilus sp.
GCA_946999425.1ContigCAMQDG000000000SAMEA111388739
uncultured Peptoniphilus sp.
GCA_946998875.1ContigCAMQAY000000000SAMEA111388703
uncultured Peptoniphilus sp.
GCA_946998035.1ContigCAMPWQ000000000SAMEA111388706
uncultured Peptostreptococcaceae bacterium
GCA_946997655.1ContigCAMPXA000000000SAMEA111388729
uncultured Peptostreptococcus sp.
GCA_946997275.1ContigCAMPUN000000000SAMEA111388707
uncultured Porphyromonas sp.
GCA_946999155.1ContigCAMQCH000000000SAMEA111388700
uncultured Porphyromonas sp.
GCA_946998905.1ContigCAMQAR000000000SAMEA111388638
uncultured Prevotella sp.
GCA_946999045.1ContigCAMQBR000000000SAMEA111388677
uncultured Prevotella sp.
GCA_946998295.1ContigCAMPYS000000000SAMEA111388664
uncultured Prevotella sp.
GCA_946998205.1ContigCAMPYJ000000000SAMEA111388720
uncultured Prevotella sp.
GCA_946999295.1ContigCAMQCL000000000SAMEA111388728
uncultured Prevotella sp.
GCA_946999025.1ContigCAMQBP000000000SAMEA111388699
uncultured Prevotella sp.
GCA_946997935.1ContigCAMPXI000000000SAMEA111388745
uncultured Rickettsiales bacterium
GCA_946997945.1ContigCAMPXN000000000SAMEA111388651
uncultured Sneathia sp.
GCA_946997705.1ContigCAMPWC000000000SAMEA111388645
uncultured Sneathia sp.
GCA_946998105.1ContigCAMPYC000000000SAMEA111388674
uncultured Tessaracoccus sp.
GCA_946998405.1ContigCAMPYY000000000SAMEA111388650
uncultured Tissierellia bacterium
GCA_946999945.1ContigCAMQFC000000000SAMEA111388619
uncultured Tissierellia bacterium
GCA_946997915.1ContigCAMPWY000000000SAMEA111388741
uncultured Veillonellaceae bacterium
GCA_946999865.1ContigCAMQEQ000000000SAMEA111388723
uncultured Veillonellaceae bacterium

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