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Accession: PRJNA678454 ID: 678454

human gut metagenome

Shotgun metagenomic sequencing of stool samples from two South African cohorts

Shotgun metagenomic sequencing of stool samples from two South African cohorts (rural Bushbuckridge, urban Soweto)
AccessionPRJNA678454
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organismhuman gut metagenome[Taxonomy ID: 408170]
unclassified sequences; metagenomes; organismal metagenomes; human gut metagenome
SubmissionRegistration date: 26-Jan-2022
Stanford University School of Medicine
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)1381
WGS master1359
Genomic DNA22
SRA Experiments172
Protein Sequences46939
Other datasets
BioSample1550
Assembly1381
Assembly details:
Assembly levelNumber of Assemblies
4
18
1337
22
1381
AssemblyLevelWGSChrsBioSampleIsolateTaxonomy
GCA_021615795.1ScaffoldJAJWFV000000000
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C4_81_sub.fa
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C13_61.fa
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C25_bin.4.fa
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A70_bin.8.fa
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A18_39.fa
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C16_bin.41_sub.fa
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C16_bin.8.fa
GCA_021624685.1ScaffoldJAJXLB000000000
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C27_21.fa
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B24_bin.30.fa
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B31_28.fa
GCA_021622995.1ScaffoldJAJWJZ000000000
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C22_7_sub.fa
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B66_bin.2.fa
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C31_43.fa
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SAMN23483735
C33_23.fa
GCA_021641785.1ScaffoldJAJXQK000000000
SAMN23483787
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GCA_021641985.1ScaffoldJAJXPN000000000
SAMN23483764
C4_bin.34.fa
GCA_022009735.1ChromosomeSAMN23483866
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GCA_022009815.1Complete genomeSAMN23483860
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A55_19.fa
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SAMN23482573
A41_3.fa
GCA_021628705.1ContigJAJXSD000000000
SAMN23483846
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GCA_021628675.1ContigJAJXSK000000000
SAMN23483858
nC33_bin.24.fa
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SAMN23483821
C9_bin.38.fa
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C11_maxbin.015_sub.fa
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C23_maxbin.006.fa
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B28_63.fa
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B28_bin.1.fa
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SAMN23483673
C29_50_sub.fa
GCA_021638065.1ScaffoldJAJWSL000000000
SAMN23483164
B5_maxbin.014_sub.fa
GCA_021638025.1ScaffoldJAJWTX000000000
SAMN23483202
B56_maxbin.013.fa
GCA_021638725.1ScaffoldJAJXLO000000000
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GCA_021619925.1ScaffoldJAJVXW000000000
SAMN23482629
A55_27.fa
GCA_021619465.1ScaffoldJAJVYT000000000
SAMN23482652
A61_bin.7.fa
GCA_021619565.1ScaffoldJAJVYO000000000
SAMN23482647
A60_bin.2.fa
GCA_021620265.1ScaffoldJAJVXF000000000
SAMN23482612
A50_bin.4.fa
GCA_021628445.1ScaffoldJAJWZK000000000
SAMN23483345
B74_maxbin.001.fa
GCA_021627505.1ScaffoldJAJXCT000000000
SAMN23483432
C10_71.fa
GCA_021626595.1ScaffoldJAJXFP000000000
SAMN23483506
C15_48.fa
GCA_021627145.1ScaffoldJAJXDP000000000
SAMN23483454
C12_62.fa
GCA_021623865.1ScaffoldJAJWIK000000000
SAMN23482903
B28_16.fa
GCA_021623945.1ScaffoldJAJWIF000000000
SAMN23482898
B27_bin.6.fa
GCA_021624935.1ScaffoldJAJXKF000000000
SAMN23483626
C24_28.fa
GCA_021625185.1ScaffoldJAJXJU000000000
SAMN23483615
C22_bin.8.fa
GCA_021635125.1ScaffoldJAJWOX000000000
SAMN23483072
B45_57.fa
GCA_021636495.1ScaffoldJAJWMH000000000
SAMN23483004
B39_maxbin.008.fa
GCA_021634715.1ScaffoldJAJWPS000000000
SAMN23483093
B46_73.fa
GCA_021639035.1ScaffoldJAJXJG000000000
SAMN23483601
C21_71.fa
GCA_021629965.1ScaffoldJAJXOU000000000
SAMN23483745
C4_114.fa
GCA_021629865.1ScaffoldJAJXOZ000000000
SAMN23483750
C4_29.fa
GCA_021626825.1ScaffoldJAJXFD000000000
SAMN23483494
C14_57_sub.fa
GCA_021627225.1ScaffoldJAJXDL000000000
SAMN23483450
C12_114.fa
GCA_021626695.1ScaffoldJAJXFM000000000
SAMN23483503
C15_32_sub.fa
GCA_021618015.1ScaffoldJAJWBO000000000
SAMN23482725
B10_bin.23.fa
GCA_021640805.1ScaffoldJAJWZD000000000
SAMN23483338
B74_8.fa
GCA_021641825.1ScaffoldJAJXQE000000000
SAMN23483781
C6_5.fa
GCA_021622885.1ScaffoldJAJWKT000000000
SAMN23482964
B34_80.fa
GCA_021639125.1ScaffoldJAJXIM000000000
SAMN23483581
C2_bin.27.fa
GCA_021616965.1ScaffoldJAJWDN000000000
SAMN23482776
B15_57.fa
GCA_021615115.1ScaffoldJAJWHB000000000
SAMN23482868
B24_bin.10.fa
GCA_022010055.1ChromosomeSAMN23483836
nC27_bin.160.fa
GCA_021638685.1ScaffoldJAJXLQ000000000
SAMN23483663
C27_maxbin.005.fa
GCA_021629765.1ScaffoldJAJXPQ000000000
SAMN23483767
C4_bin.40.fa
GCA_021631445.1ScaffoldJAJWWB000000000
SAMN23483258
B66_bin.10.fa
GCA_021631345.1ScaffoldJAJWWF000000000
SAMN23483262
B67_1.fa
GCA_022010075.1ChromosomeSAMN23483834
nC27_bin.114.fa
GCA_021627945.1ScaffoldJAJXBT000000000
SAMN23483406
C1_114.fa
GCA_021640915.1ScaffoldJAJWZA000000000
SAMN23483335
B74_68_sub.fa
GCA_021621845.1ScaffoldJAJVUF000000000
SAMN23482534
A29_7.fa
GCA_021630905.1ScaffoldJAJXMN000000000
SAMN23483686
C3_17.fa
GCA_021630565.1ScaffoldJAJXNK000000000
SAMN23483709
C30_bin.15.fa
GCA_021616065.1ScaffoldJAJWFH000000000
SAMN23482822
B18_maxbin.003_sub.fa
GCA_021631935.1ScaffoldJAJWUG000000000
SAMN23483211
B59_14.fa
GCA_021638505.1ScaffoldJAJXMI000000000
SAMN23483681
C29_maxbin.002_sub.fa
GCA_021634825.1ScaffoldJAJWPN000000000
SAMN23483088
B46_39_sub.fa
GCA_021635385.1ScaffoldJAJWOL000000000
SAMN23483060
B44_63.fa
GCA_021636235.1ScaffoldJAJWMU000000000
SAMN23483017
B4_bin.8.fa
GCA_021621445.1ScaffoldJAJVUY000000000
SAMN23482553
A34_maxbin.001.fa
GCA_021621365.1ScaffoldJAJVVC000000000
SAMN23482557
A35_bin.6_sub.fa
GCA_021622925.1ScaffoldJAJWKR000000000
SAMN23482962
B34_64.fa
GCA_021623165.1ScaffoldJAJWJQ000000000
SAMN23482935
B31_4_sub.fa
GCA_021622625.1ScaffoldJAJVSR000000000
SAMN23482494
A13_bin.11.fa
GCA_021622475.1ScaffoldJAJVTB000000000
SAMN23482504
A19_bin.10.fa
GCA_021619575.1ScaffoldJAJVYL000000000
SAMN23482644
A6_bin.10.fa
GCA_021625865.1ScaffoldJAJXIC000000000
SAMN23483571
C2_15.fa
GCA_021624635.1ScaffoldJAJXLE000000000
SAMN23483651
C27_63.fa
GCA_021641555.1ScaffoldJAJXNB000000000
SAMN23483700
C3_bin.42.fa
GCA_021639265.1ScaffoldJAJXHU000000000
SAMN23483563
C19_57.fa
GCA_021639565.1ScaffoldJAJXGQ000000000
SAMN23483533
C16_bin.46.fa
GCA_021639965.1ScaffoldJAJXEI000000000
SAMN23483473
C13_29.fa
GCA_021624575.1ScaffoldJAJXLG000000000
SAMN23483653
C27_bin.20.fa
GCA_021624285.1ScaffoldJAJXMF000000000
SAMN23483678
C29_bin.23_sub.fa
GCA_021624485.1ScaffoldJAJXLK000000000
SAMN23483657
C27_bin.4.fa
GCA_021625105.1ScaffoldJAJXJY000000000
SAMN23483619
C23_73.fa
GCA_021628125.1ScaffoldJAJXAV000000000
SAMN23483382
B79_66.fa
GCA_021628185.1ScaffoldJAJXAR000000000
SAMN23483378
B79_45.fa
GCA_021626145.1ScaffoldJAJXGV000000000
SAMN23483538
C16_maxbin.013.fa
GCA_021623065.1ScaffoldJAJWJW000000000
SAMN23482941
B31_bin.16.fa
GCA_021633755.1ScaffoldJAJWSI000000000
SAMN23483161
B5_bin.48.fa
GCA_021633865.1ScaffoldJAJWSD000000000
SAMN23483156
B5_bin.20.fa
GCA_021629885.1ScaffoldJAJXOX000000000
SAMN23483748
C4_15.fa
GCA_021616505.1ScaffoldJAJWEK000000000
SAMN23482799
B17_46.fa
GCA_021616355.1ScaffoldJAJWES000000000
SAMN23482807
B17_maxbin.004_sub.fa
GCA_021616685.1ScaffoldJAJWEA000000000
SAMN23482789
B16_bin.29_sub.fa
GCA_021617755.1ScaffoldJAJWBZ000000000
SAMN23482736
B11_bin.7.fa
GCA_021617885.1ScaffoldJAJWBT000000000
SAMN23482730
B11_64.fa
SRA Data Details
ParameterValue
Data volume, Gbases625
Data volume, Tbytes0.30

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