Photosynthetic Activated Sludge Bioreactor (ID 704939) - BioProject

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Accession: PRJNA704939 ID: 704939

Photosynthetic Activated Sludge Bioreactor

Photosynthetic Activated Sludge Bioreactor Metagenome

Three metagenomes and 86 metagenome assembled genomes (MAGs) from microbial community performing photosynthetic biological nutrient removal in a sequencing batch reactor.

Accession	PRJNA704939
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	activated sludge metagenome[Taxonomy ID: 942017] unclassified sequences; metagenomes; ecological metagenomes; activated sludge metagenome
Publications	McDaniel EA et al., "Genome-Resolved Metagenomics of a Photosynthetic Bioreactor Performing Biological Nutrient Removal.", Microbiol Resour Announc, 2021 May 6;10(18) Oyserman BO et al., "Community Assembly and Ecology of Activated Sludge under Photosynthetic Feast-Famine Conditions.", Environ Sci Technol, 2017 Mar 21;51(6):3165-3175
Submission	Registration date: 8-Mar-2021 University of Wisconsin-Madison
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	86
SRA Experiments	3
Publications
PubMed	2
PMC	1
Other datasets
BioSample	89
Assembly	86

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

46
40
86

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_017302555.1	JAFLDK000000000	SAMN18059893	UW10-POB	Accumulibacter sp.
GCA_017302455.1	JAFLDO000000000	SAMN18059897	UW9-POB	Accumulibacter sp.
GCA_017302385.1	JAFLDP000000000	SAMN18059898	UW11-POB	Accumulibacter sp.
GCA_017302345.1	JAFLDN000000000	SAMN18059896	UW8-POB	Accumulibacter sp.
GCA_017302415.1	JAFLDM000000000	SAMN18059895	UW13-POB	Accumulibacter sp.
GCA_017304135.1	JAFLBB000000000	SAMN18059832	UWPOB_ACIDO1	Acidobacteriota bacterium
GCA_017303955.1	JAFLBC000000000	SAMN18059833	UWPOB_ACIDO2	Acidobacteriota bacterium
GCA_017302575.1	JAFLDD000000000	SAMN18059886	UWPOB_ALPHA2	Alphaproteobacteria bacterium
GCA_017302755.1	JAFLCR000000000	SAMN18059874	UWPOB_ALPHA1	Alphaproteobacteria bacterium
GCA_017302165.1	JAFLCW000000000	SAMN18059879	UWPOB_MICAV1	Alphaproteobacteria bacterium
GCA_017303775.1	JAFLCH000000000	SAMN18059864	UWPOB_ANAER3	Anaerolineae bacterium
GCA_017303735.1	JAFLCF000000000	SAMN18059862	UWPOB_ANAER2	Anaerolineae bacterium
GCA_017303655.1	JAFLCE000000000	SAMN18059861	UWPOB_ANAER1	Anaerolineae bacterium
GCA_017303635.1	JAFLCG000000000	SAMN18059863	UWPOB_ANAER4	Anaerolineae bacterium
GCA_017303935.1	JAFLBD000000000	SAMN18059834	UWPOB_ARMA1	Armatimonadota bacterium
GCA_017303995.1	JAFLBE000000000	SAMN18059835	UWPOB_BACT1	Bacteroidota bacterium
GCA_017303975.1	JAFLBG000000000	SAMN18059837	UWPOB_BACT2	Bacteroidota bacterium
GCA_017303905.1	JAFLBH000000000	SAMN18059838	UWPOB_CHIT1	Bacteroidota bacterium
GCA_017303895.1	JAFLBF000000000	SAMN18059836	UWPOB_BACT3	Bacteroidota bacterium
GCA_017302725.1	JAFLDF000000000	SAMN18059888	UWPOB_OTTO1	Burkholderiales bacterium
GCA_017302505.1	JAFLDH000000000	SAMN18059890	UWPOB_RUBRI2	Burkholderiales bacterium
GCA_017302495.1	JAFLDG000000000	SAMN18059889	UWPOB_RUBRI1	Burkholderiales bacterium
GCA_017302485.1	JAFLDI000000000	SAMN18059891	UWPOB_VITRI1	Burkholderiales bacterium
GCA_017302475.1	JAFLDJ000000000	SAMN18059892	UWPOB_BURK2	Burkholderiales bacterium
GCA_017302655.1	JAFLDE000000000	SAMN18059887	UWPOB_BURK1	Burkholderiales bacterium
GCA_017302435.1	JAFLDL000000000	SAMN18059894	UW12-POB	Candidatus Accumulibacter necessarius
GCA_017304075.1	JAFLCI000000000	SAMN18059865	UWPOB_ANAER5	Candidatus Flexifilum breve
GCA_017302855.1	JAFLBY000000000	SAMN18059855	UWPOB_KAPA1	Candidatus Kapaibacterium sp.
GCA_017303615.1	JAFLCK000000000	SAMN18059867	UWPOB_OBS1	Candidatus Obscuribacter phosphatis
GCA_017303355.1	JAFLCU000000000	SAMN18059877	UWPOB_CAULO3	Caulobacterales bacterium
GCA_017303435.1	JAFLCV000000000	SAMN18059878	UWPOB_CAULO4	Caulobacterales bacterium
GCA_017302335.1	JAFLCT000000000	SAMN18059876	UWPOB_CAULO1	Caulobacterales bacterium
GCA_017302105.1	JAFLCS000000000	SAMN18059875	UWPOB_CAULO2	Caulobacterales bacterium
GCA_017303415.1	JAFLBJ000000000	SAMN18059840	UWPOB_CHIT3	Chitinophagales bacterium
GCA_017303395.1	JAFLBN000000000	SAMN18059844	UWPOB_CHIT7	Chitinophagales bacterium
GCA_017303475.1	JAFLBO000000000	SAMN18059845	UWPOB_CHIT8	Chitinophagales bacterium
GCA_017303455.1	JAFLBM000000000	SAMN18059843	UWPOB_CHIT5	Chitinophagales bacterium
GCA_017303335.1	JAFLBK000000000	SAMN18059841	UWPOB_CHIT4	Chitinophagales bacterium
GCA_017303875.1	JAFLBP000000000	SAMN18059846	UWPOB_CHIT9	Chitinophagales bacterium
GCA_017303855.1	JAFLBL000000000	SAMN18059842	UWPOB_CHIT6	Chitinophagales bacterium
GCA_017303835.1	JAFLBI000000000	SAMN18059839	UWPOB_CHIT2	Chitinophagales bacterium
GCA_017303795.1	JAFLBR000000000	SAMN18059848	UWPOB_CYTO2	Cytophagales bacterium
GCA_017303805.1	JAFLBQ000000000	SAMN18059847	UWPOB_CYTO1	Cytophagales bacterium
GCA_017302355.1	JAFLDQ000000000	SAMN18059899	UWPOB_DECH1	Dechloromonas sp.
GCA_017302835.1	JAFLCC000000000	SAMN18059859	UWPOB_DELTA3	Deltaproteobacteria bacterium
GCA_017302795.1	JAFLCB000000000	SAMN18059858	UWPOB_DELTA2	Deltaproteobacteria bacterium
GCA_017302715.1	JAFLCD000000000	SAMN18059860	UWPOB_DELTA4	Deltaproteobacteria bacterium
GCA_017302875.1	JAFLCA000000000	SAMN18059857	UWPOB_DELTA1	Deltaproteobacteria bacterium
GCA_017303575.1	JAFLCL000000000	SAMN18059868	UWPOB_DELTA5	Deltaproteobacteria bacterium
GCA_017303755.1	JAFLBS000000000	SAMN18059849	UWPOB_FLAVO2	Flavobacteriales bacterium
GCA_017303695.1	JAFLBU000000000	SAMN18059851	UWPOB_FLAVO3	Flavobacteriales bacterium
GCA_017302935.1	JAFLBT000000000	SAMN18059850	UWPOB_FLAVO1	Flavobacteriales bacterium
GCA_017302255.1	JAFLDV000000000	SAMN18059904	UWPOB_PARA1	Gammaproteobacteria bacterium
GCA_017302205.1	JAFLDW000000000	SAMN18059905	UWPOB_GAMMA1	Gammaproteobacteria bacterium
GCA_017302635.1	JAFLCX000000000	SAMN18059880	UWPOB_RHIZO1	Hyphomicrobiales bacterium
GCA_017302895.1	JAFLBV000000000	SAMN18059852	UWPOB_IGNAVI1	Ignavibacteria bacterium
GCA_017302885.1	JAFLBW000000000	SAMN18059853	UWPOB_IGNAVI2	Ignavibacteria bacterium
GCA_017303675.1	JAFLBX000000000	SAMN18059854	UWPOB_IGNAVI3	Ignavibacteria bacterium
GCA_017302695.1	JAFLCJ000000000	SAMN18059866	UWPOB_LEPTO1	Leptolyngbya sp. UWPOB_LEPTO1
GCA_017302215.1	JAFLDX000000000	SAMN18059906	UWPOB_RHODAN1	Lysobacterales bacterium
GCA_017302075.1	JAFLEB000000000	SAMN18059910	UWPOB_THERMO2	Lysobacterales bacterium
GCA_017302035.1	JAFLEA000000000	SAMN18059909	UWPOB_PSEUDO1	Lysobacterales bacterium
GCA_017302155.1	JAFLDY000000000	SAMN18059907	UWPOB_AQUI1	Lysobacterales bacterium
GCA_017302135.1	JAFLDZ000000000	SAMN18059908	UWPOB_LYSO1	Lysobacterales bacterium
GCA_017302095.1	JAFLEC000000000	SAMN18059911	UWPOB_THERMO1	Lysobacterales bacterium
GCA_017303565.1	JAFLCM000000000	SAMN18059869	UWPOB_PLANC1	Planctomycetota bacterium
GCA_017303555.1	JAFLCN000000000	SAMN18059870	UWPOB_PLANC2	Planctomycetota bacterium
GCA_017303535.1	JAFLCO000000000	SAMN18059871	UWPOB_PLAC3	Planctomycetota bacterium
GCA_017303505.1	JAFLCP000000000	SAMN18059872	UWPOB_PLANC4	Planctomycetota bacterium
GCA_017302815.1	JAFLCQ000000000	SAMN18059873	UWPOB_PLANC5	Planctomycetota bacterium
GCA_017303485.1	JAFLCY000000000	SAMN18059881	UWPOB_RHODOB1	Rhodobacterales bacterium
GCA_017303715.1	JAFLBZ000000000	SAMN18059856	UWPOB_RHODO1	Rhodothermia bacterium
GCA_017302665.1	JAFLCZ000000000	SAMN18059882	UWPOB_RICK1	Rickettsiales bacterium
GCA_017302595.1	JAFLDA000000000	SAMN18059883	UWPOB_RICK2	Rickettsiales bacterium
GCA_017302615.1	JAFLDB000000000	SAMN18059884	UWPOB_SPHING2	Sphingomonadales bacterium
GCA_017302775.1	JAFLDC000000000	SAMN18059885	UWPOB_SPHING1	Sphingomonadales bacterium
GCA_017302045.1	JAFLED000000000	SAMN18059912	UWPOB_SPIRO1	Spirochaetota bacterium
GCA_017302015.1	JAFLEE000000000	SAMN18059913	UWPOB_SPIRO2	Spirochaetota bacterium
GCA_017302275.1	JAFLDR000000000	SAMN18059900	UWPOB_SULF1	Sulfuritalea sp.
GCA_017302295.1	JAFLDS000000000	SAMN18059901	UWPOB_THAU1	Thauera sp.
GCA_017302195.1	JAFLEG000000000	SAMN18059915	UWPOB_VERRUCO1	Verrucomicrobiota bacterium
GCA_017301975.1	JAFLEI000000000	SAMN18059917	UWPOB_VERRUCO4	Verrucomicrobiota bacterium
GCA_017301995.1	JAFLEH000000000	SAMN18059916	UWPOB_VERRUCO3	Verrucomicrobiota bacterium
GCA_017309115.1	JAFLEF000000000	SAMN18059914	UWPOB_VERRUCO2	Verrucomicrobiota bacterium
GCA_017309145.1	JAFLDU000000000	SAMN18059903	UWPOB_ZOOG1	Zoogloea sp.
GCA_017302315.1	JAFLDT000000000	SAMN18059902	UWPOB_ZOOG2	Zoogloea sp.

SRA Data Details

Parameter	Value
Data volume, Gbases	78
Data volume, Mbytes	47784

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Photosynthetic Activated Sludge Bioreactor Metagenome

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