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Accession: PRJNA692829 ID: 692829

Genome sequencing of carbapenem-resistant Enterobacterales isolates from federal state Hesse, Germany

Carbapenem-resistant Enterobacterales (CRE) isolates collected within the project SurvCARE in the federal state Hesse, Germany, were sequenced to determine the genomic landscape of CREs in Hesse
AccessionPRJNA692829
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 18-Jan-2021
SurvCARE
- Justus-Liebig-University Giessen
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)595
WGS master570
Genomic DNA25
Protein Sequences2387
Other datasets
BioSample570
Assembly570
Assembly details:
Assembly levelNumber of Assemblies
539
31
570
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_018422255.1ScaffoldJAFHGC000000000
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Survcare359
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GCA_018420315.1ScaffoldJAFHJW000000000
SAMN17373137
va17061857
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va18095594
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SAMN17372108
Survcare213
GCA_018446675.1ScaffoldJAFIAA000000000
SAMN17372146
Survcare255
GCA_018446635.1ScaffoldJAFIAI000000000
SAMN17372154
Survcare266
GCA_018445625.1ScaffoldJAFHQX000000000
SAMN17371907
sp17017045
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Survcare004
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SAMN17371922
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SAMN17371924
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SAMN17371937
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SAMN17371961
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bk18035705
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NRZ-37119
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sc17238571
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sc19446287
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GCA_018422455.2ScaffoldJAFHFR000000000SAMN17373027
Survcare347
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SAMN17373065
Survcare397
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sc18412783
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SAMN17371886
sc18407397
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Survcare235
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SAMN17372993
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SAMN17371904
sc19460931
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SAMN17372060
Survcare146
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SAMN17373047
Survcare369
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va18111651
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Survcare232
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Survcare203
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SAMN17372110
Survcare218
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SAMN17373091
Survcare428
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SAMN17371863
sc17259839
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SAMN17372101
Survcare192
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SAMN17372147
Survcare257
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SAMN17373034
Survcare355
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Entero23
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NRZ-38364
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AF-147492
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Entero22
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SAMN17372030
Survcare111
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SAMN17372015
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SAMN17372978
Survcare286
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SAMN17372976
Survcare284
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SAMN17373042
Survcare364
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SAMN17373045
Survcare367
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SAMN17373046
Survcare368
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SAMN17373040
Survcare361
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SAMN17373051
Survcare374
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SAMN17373052
Survcare375
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SAMN17373053
Survcare376
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SAMN17373084
Survcare419
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SAMN17373075
Survcare407
GCA_018421455.1ScaffoldJAFHHR000000000
SAMN17373079
Survcare413
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SAMN17373081
Survcare415
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SAMN17373082
Survcare416
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SAMN17373072
Survcare404
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SAMN17373074
Survcare406
GCA_018420275.1ScaffoldJAFHJY000000000
SAMN17373139
va17079043
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SAMN17373133
ur18064212
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SAMN17373128
ur17046257
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SAMN17373129
ur17048087
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SAMN17373115
Survcare455
GCA_018420715.1ScaffoldJAFHJC000000000
SAMN17373117
Survcare458
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SAMN17373122
Survcare464
GCA_018420595.1ScaffoldJAFHJJ000000000
SAMN17373124
Survcare467
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SAMN17373123
Survcare466
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SAMN17373125
ur17031891
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SAMN17373119
Survcare461
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SAMN17373126
ur17032073
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SAMN17373127
ur17042039
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SAMN17373100
Survcare439
GCA_018420995.1ScaffoldJAFHIN000000000
SAMN17373102
Survcare441
GCA_018421015.1ScaffoldJAFHIM000000000
SAMN17373101
Survcare440
GCA_018421145.1ScaffoldJAFHIG000000000
SAMN17373094
Survcare431
GCA_018421115.1ScaffoldJAFHIH000000000
SAMN17373095
Survcare432
GCA_018421275.1ScaffoldJAFHIA000000000
SAMN17373088
Survcare425
GCA_018420865.1ScaffoldJAFHIS000000000
SAMN17373107
Survcare446
GCA_018420855.1ScaffoldJAFHIV000000000
SAMN17373110
Survcare449
GCA_018439625.3ScaffoldJAFHNF000000000SAMN17371811
NRZ-33665
GCA_018439855.3ScaffoldJAFHMT000000000SAMN17371799
NRZ-30046
GCA_018442945.3ScaffoldJAFHVE000000000SAMN17372018
Survcare097
GCA_018447115.2ScaffoldJAFHYX000000000
SAMN17372117
Survcare226
GCA_018420335.1ScaffoldJAFHJU000000000
SAMN17373135
ur19078501
GCA_018420215.1ScaffoldJAFHJZ000000000
SAMN17373140
va18094818
GCA_018443345.1ScaffoldJAFHUL000000000
SAMN17371999
Survcare078
GCA_018445205.1ScaffoldJAFHRV000000000
SAMN17371931
Survcare013
GCA_018446665.1ScaffoldJAFIAD000000000
SAMN17372149
Survcare260
GCA_018447615.1ScaffoldJAFIBA000000000
SAMN17372083
Survcare171
GCA_018446315.1ScaffoldJAGYYE000000000
SAMN17372988
Survcare298
GCA_018441705.1ScaffoldJAFHXM000000000
SAMN17372078
Survcare166
GCA_018422315.1ScaffoldJAFHGA000000000
SAMN17373036
Survcare357
GCA_018441545.1ScaffoldJAFHXX000000000
SAMN17372090
Survcare178
GCA_018442055.1ScaffoldJAFHWS000000000
SAMN17372058
Survcare143
GCA_018421655.1ScaffoldJAFHHH000000000
SAMN17373069
Survcare401
GCA_018422015.1ContigJAFHGO000000000
SAMN17373050
Survcare372
GCA_018421375.1ScaffoldJAFHHS000000000
SAMN17373080
Survcare414
GCA_018447515.1ScaffoldJAFHYA000000000
SAMN17372093
Survcare182
GCA_018439585.1ScaffoldJAFHNJ000000000
SAMN17371815
NRZ-33784
GCA_018439475.1ScaffoldJAFHNN000000000
SAMN17371819
NRZ-34952
GCA_018442265.1ScaffoldJAFHWH000000000
SAMN17372047
Survcare128
GCA_018441605.1ScaffoldJAFHXW000000000
SAMN17372089
Survcare177
GCA_018441885.1ScaffoldJAFHXB000000000
SAMN17372067
Survcare155
GCA_018441865.1ScaffoldJAFHXC000000000
SAMN17372068
Survcare156
GCA_018441845.1ScaffoldJAFHXD000000000
SAMN17372069
Survcare157
GCA_018441805.1ScaffoldJAFHXF000000000
SAMN17372071
Survcare159
GCA_018441815.1ScaffoldJAFHXE000000000
SAMN17372070
Survcare158
GCA_018440405.1ScaffoldJAFHLS000000000
SAMN17371772
2110128687
GCA_018440375.1ScaffoldJAFHLT000000000
SAMN17371773
2110129324
GCA_018439695.1ScaffoldJAFHNB000000000
SAMN17371807
NRZ-32813
GCA_018438815.3ContigJAFHOU000000000SAMN17371852
NRZ-41724
GCA_018420695.1ScaffoldJAFHJD000000000
SAMN17373118
Survcare460
GCA_018443165.3ScaffoldJAFHUT000000000SAMN17372007
Survcare085
GCA_018443145.2ScaffoldJAFHUU000000000
SAMN17372008
Survcare086
GCA_018423285.1ScaffoldJAFHED000000000
SAMN17372985
Survcare294
GCA_018439325.1ScaffoldJAFHNT000000000
SAMN17371825
NRZ-36532
GCA_018439525.1ScaffoldJAFHNK000000000
SAMN17371816
NRZ-33852
GCA_018440225.1ContigJAFHLZ000000000
SAMN17371779
bk17021853
GCA_018438845.1ScaffoldJAFHOS000000000
SAMN17371850
NRZ-41658
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SAMN17372086
Survcare174
GCA_018441345.1ContigJAFHYZ000000000
SAMN17372119
Survcare228
GCA_018441325.1ScaffoldJAFHYY000000000
SAMN17372118
Survcare227
GCA_018441125.1ScaffoldJAFIAK000000000
SAMN17372156
Survcare268
GCA_018442925.1ScaffoldJAFHVG000000000
SAMN17372020
Survcare099
GCA_018442905.1ScaffoldJAFHVF000000000
SAMN17372019
Survcare098
GCA_018442885.1ScaffoldJAFHVH000000000
SAMN17372021
Survcare100
GCA_018442865.1ScaffoldJAFHVI000000000
SAMN17372022
Survcare101
GCA_018442825.1ScaffoldJAFHVJ000000000
SAMN17372023
Survcare102
GCA_018444085.1ScaffoldJAFHTN000000000
SAMN17371975
Survcare061-1
GCA_018446715.1ScaffoldJAFIAC000000000
SAMN17372148
Survcare258
GCA_018446955.1ScaffoldJAFHZJ000000000
SAMN17372129
Survcare238-2
GCA_018446535.1ScaffoldJAFIAM000000000
SAMN17372158
Survcare270
GCA_018446495.1ScaffoldJAFIAX000000000
SAMN17372169
Survcare281
GCA_018446395.1ContigJAFIAY000000000
SAMN17372170
Survcare282
GCA_018421085.1ScaffoldJAFHIK000000000
SAMN17373099
Survcare436
GCA_018441575.1ScaffoldJAFHXU000000000
SAMN17372087
Survcare175

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