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Accession: PRJNA503328 ID: 503328

invertebrate metagenome

Foraminiferal nitrate respiration in oxygen minimum zones - past and present - Metagenomics

Foraminiferal samples were taken at the oxygen minimum zone off Peru to identify their genetic repertoire for denitrification and associated bacterial communities.
AccessionPRJNA503328
Data TypeGenome sequencing and assembly
ScopeEnvironment
Organisminvertebrate metagenome[Taxonomy ID: 1711999]
unclassified sequences; metagenomes; organismal metagenomes; invertebrate metagenome
Publications
  • Woehle C et al., "Denitrification in foraminifera has an ancient origin and is complemented by associated bacteria.", Proc Natl Acad Sci U S A, 2022 Jun 21;119(25):e2200198119
  • Published online: Woehle C et al., "Denitrification in foraminifera has ancient origins and is complemented by associated bacteria", bioRxiv, 2021;
SubmissionRegistration date: 24-Jun-2022
Kiel University
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)273
SRA Experiments20
Publications
PubMed1
PMC1
Other datasets
BioSample283
Assembly273
Assembly details:
Assembly levelNumber of Assemblies
273
273
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_024230495.1ContigJAAERI000000000SAMN13632706
Nau_1
GCA_024229075.1ContigJAAESV000000000SAMN13632746
Ust_21
GCA_024229435.1ContigJAAESK000000000SAMN13632735
Ust_10
GCA_024229455.1ContigJAAESL000000000SAMN13632736
Ust_11
GCA_024229995.1ContigJAAERT000000000SAMN13632717
Nau_12
GCA_024228575.1ContigJAAETH000000000SAMN13632760
Vin_2
GCA_024228435.1ContigJAAETL000000000SAMN13632764
Vin_6
GCA_024227975.1ContigJAAETV000000000SAMN13632774
Vin_16
GCA_024227255.1ContigJAAEKX000000000SAMN13632531
Bco_5
GCA_024226835.1ContigJAAELI000000000SAMN13632542
Bpl_1
GCA_024226615.1ContigJAAELN000000000SAMN13632547
Bpl_6
GCA_024226125.1ContigJAAELX000000000SAMN13632558
Bpl_17
GCA_024222295.1ContigJAAEPF000000000SAMN13632647
Cli_3
GCA_024225275.1ContigJAAEMS000000000SAMN13632579
Bse_12
GCA_024224235.1ContigJAAENT000000000SAMN13632607
Bsp_8
GCA_024224195.1ContigJAAENQ000000000SAMN13632604
Bsp_5
GCA_024227895.1ContigJAAETY000000000SAMN13632777
Vin_19
GCA_024227415.1ContigJAAEKV000000000SAMN13632528
Bco_2
GCA_024228595.1ContigJAAETF000000000SAMN13632758
Ust_33
GCA_024232155.1ContigJAAEPX000000000SAMN13632668
Gpa_3
GCA_024206155.1ContigJAAGZR000000000SAMN13632755
Ust_30
GCA_024222595.1ContigJAAEOX000000000SAMN13632639
Cca_18
GCA_024227565.1ContigJAAEUE000000000SAMN13632783
Vin_25
GCA_024244705.1ContigJAAEOK000000000SAMN13632626
Cca_5
GCA_024223395.1ContigJAAEOF000000000SAMN13632621
Bsp_22
GCA_024223975.1ContigJAAENW000000000SAMN13632610
Bsp_11
GCA_024206215.1ContigJAAGZS000000000SAMN13632789
Vin_31
GCA_024229555.1ContigJAAESH000000000SAMN13632732
Ust_7
GCA_024228275.1ContigJAAETO000000000SAMN13632767
Vin_9
GCA_024222455.1ContigJAAEPD000000000SAMN13632645
Cli_1
GCA_024226915.1ContigJAAELG000000000SAMN13632540
Bco_14
GCA_024226955.1ContigJAAELF000000000SAMN13632539
Bco_13
GCA_024229735.1ContigJAAESB000000000SAMN13632726
Ust_1
GCA_024229215.1ContigJAAESR000000000SAMN13632742
Ust_17
GCA_024232015.1ContigJAAEPY000000000SAMN13632669
Gpa_4
GCA_024244665.1ContigJAAEOI000000000SAMN13632624
Cca_3
GCA_024206165.1ContigJAAGZN000000000SAMN13632665
Cli_21
GCA_024225075.1ContigJAAEMY000000000SAMN13632585
Bse_18
GCA_024231975.1ContigJAAEQB000000000SAMN13632672
Gpa_7
GCA_024230475.1ContigJAAERK000000000SAMN13632708
Nau_3
GCA_024231615.1ContigJAAEQI000000000SAMN13632679
Gpa_14
GCA_024223855.1ContigJAAENX000000000SAMN13632611
Bsp_12
GCA_024232435.1ContigJAAEPU000000000SAMN13632663
Cli_19
GCA_024229015.1ContigJAAESW000000000SAMN13632747
Ust_22
GCA_024231025.1ContigJAAEQW000000000SAMN13632693
Gpa_28
GCA_024223905.1ContigJAAENV000000000SAMN13632609
Bsp_10
GCA_024231175.1ContigJAAEQT000000000SAMN13632690
Gpa_25
GCA_024230695.1ContigJAAERC000000000SAMN13632700
Gpa_35
GCA_024231855.1ContigJAAEQD000000000SAMN13632674
Gpa_9
GCA_024232355.1ContigJAAEPW000000000SAMN13632667
Gpa_2
GCA_024227855.1ContigJAAETZ000000000SAMN13632778
Vin_20
GCA_024223125.1ContigJAAEOP000000000SAMN13632631
Cca_10
GCA_024224815.1ContigJAAENC000000000SAMN13632589
Bse_22
GCA_024224665.1ContigJAAENG000000000SAMN13632593
Bse_26
GCA_024222645.1ContigJAAEOY000000000SAMN13632640
Cca_19
GCA_024222605.1ContigJAAEOW000000000SAMN13632638
Cca_17
GCA_024228455.1ContigJAAETK000000000SAMN13632763
Vin_5
GCA_024232295.1ContigJAAEPT000000000SAMN13632662
Cli_18
GCA_024232835.1ContigJAAEPI000000000SAMN13632651
Cli_7
GCA_024232555.1ContigJAAEPQ000000000SAMN13632659
Cli_15
GCA_024232335.1ContigJAAEPV000000000SAMN13632666
Gpa_1
GCA_024225695.1ContigJAAEMI000000000SAMN13632569
Bse_2
GCA_024224625.1ContigJAAENH000000000SAMN13632594
Bse_27
GCA_024222795.1ContigJAAEOQ000000000SAMN13632632
Cca_11
GCA_024206435.1ContigJAAGZH000000000SAMN13632555
Bpl_14
GCA_024232635.1ContigJAAEPO000000000SAMN13632657
Cli_13
GCA_024231575.1ContigJAAEQK000000000SAMN13632681
Gpa_16
GCA_024231515.1ContigJAAEQN000000000SAMN13632684
Gpa_19
GCA_024231275.1ContigJAAEQS000000000SAMN13632689
Gpa_24
GCA_024230655.1ContigJAAERF000000000SAMN13632703
Gpa_38
GCA_024225635.1ContigJAAEMK000000000SAMN13632571
Bse_4
GCA_024225895.1ContigJAAEMC000000000SAMN13632563
Bpl_22
GCA_024225235.1ContigJAAEMW000000000SAMN13632583
Bse_16
GCA_024230975.1ContigJAAEQY000000000SAMN13632695
Gpa_30
GCA_024230435.1ContigJAAERL000000000SAMN13632709
Nau_4
GCA_024226935.1ContigJAAELK000000000SAMN13632544
Bpl_3
GCA_024226815.1ContigJAAELH000000000SAMN13632541
Bco_15
GCA_024227235.1ContigJAAEKY000000000SAMN13632532
Bco_6
GCA_024226555.1ContigJAAELO000000000SAMN13632548
Bpl_7
GCA_024227355.1ContigJAAEKW000000000SAMN13632530
Bco_4
GCA_024230835.1ContigJAAERB000000000SAMN13632699
Gpa_34
GCA_024231075.1ContigJAAEQX000000000SAMN13632694
Gpa_29
GCA_024244725.1ContigJAAEOO000000000SAMN13632630
Cca_9
GCA_024231055.1ContigJAAEQV000000000SAMN13632692
Gpa_27
GCA_024227155.1ContigJAAELB000000000SAMN13632535
Bco_9
GCA_024222865.1ContigJAAEOS000000000SAMN13632634
Cca_13
GCA_024231695.1ContigJAAEQF000000000SAMN13632676
Gpa_11
GCA_024232495.1ContigJAAEPP000000000SAMN13632658
Cli_14
GCA_024229195.1ContigJAAESS000000000SAMN13632743
Ust_18
GCA_024229295.1ContigJAAESN000000000SAMN13632738
Ust_13
GCA_024230215.1ContigJAAERP000000000SAMN13632713
Nau_8
GCA_024232475.1ContigJAAEPS000000000SAMN13632661
Cli_17
GCA_024224715.1ContigJAAENF000000000SAMN13632592
Bse_25
GCA_024206455.1ContigJAAGZG000000000SAMN13632529
Bco_3
GCA_024206415.1ContigJAAGZJ000000000SAMN13632616
Bsp_17
GCA_024206395.1ContigJAAGZK000000000SAMN13632618
Bsp_19
GCA_024206355.1ContigJAAGZM000000000SAMN13632664
Cli_20
GCA_024206335.1ContigJAAGZL000000000SAMN13632649
Cli_5
GCA_024224955.1ContigJAAENA000000000SAMN13632587
Bse_20
GCA_024225905.1ContigJAAEMF000000000SAMN13632566
Bpl_25
GCA_024225855.1ContigJAAEME000000000SAMN13632565
Bpl_24
GCA_024225495.1ContigJAAEMN000000000SAMN13632574
Bse_7
GCA_024225395.1ContigJAAEMR000000000SAMN13632578
Bse_11
GCA_024225355.1ContigJAAEMT000000000SAMN13632580
Bse_13
GCA_024224415.1ContigJAAENK000000000SAMN13632597
Bse_30
GCA_024223605.1ContigJAAEOB000000000SAMN13632615
Bsp_16
GCA_024223675.1ContigJAAENZ000000000SAMN13632613
Bsp_14
GCA_024223685.1ContigJAAEOD000000000SAMN13632619
Bsp_20
GCA_024223575.1ContigJAAEOC000000000SAMN13632617
Bsp_18
GCA_024223095.1ContigJAAEOL000000000SAMN13632627
Cca_6
GCA_024222685.1ContigJAAEOZ000000000SAMN13632641
Cca_20
GCA_024222435.1ContigJAAEPB000000000SAMN13632643
Cca_22
GCA_024222475.1ContigJAAEPA000000000SAMN13632642
Cca_21
GCA_024222615.1ContigJAAEOV000000000SAMN13632637
Cca_16
GCA_024232855.1ContigJAAEPH000000000SAMN13632650
Cli_6
GCA_024232655.1ContigJAAEPM000000000SAMN13632655
Cli_11
GCA_024232775.1ContigJAAEPN000000000SAMN13632656
Cli_12
GCA_024230095.1ContigJAAERS000000000SAMN13632716
Nau_11
GCA_024229935.1ContigJAAERX000000000SAMN13632721
Nau_16
GCA_024230955.1ContigJAAEQZ000000000SAMN13632697
Gpa_32
GCA_024230335.1ContigJAAERM000000000SAMN13632710
Nau_5
GCA_024228875.1ContigJAAETB000000000SAMN13632753
Ust_28
GCA_024229255.1ContigJAAESP000000000SAMN13632740
Ust_15
GCA_024228855.1ContigJAAETA000000000SAMN13632751
Ust_26
GCA_024229615.1ContigJAAESG000000000SAMN13632731
Ust_6
GCA_024228195.1ContigJAAETQ000000000SAMN13632769
Vin_11
GCA_024228135.1ContigJAAETR000000000SAMN13632770
Vin_12
GCA_024227615.1ContigJAAEUF000000000SAMN13632784
Vin_26
GCA_024226025.1ContigJAAEMA000000000SAMN13632561
Bpl_20
GCA_024227335.1ContigJAAEKU000000000SAMN13632527
Bco_1
GCA_024227135.1ContigJAAELC000000000SAMN13632536
Bco_10
GCA_024229875.1ContigJAAERY000000000SAMN13632722
Nau_17
GCA_024232895.1ContigJAAEPG000000000SAMN13632648
Cli_4
GCA_024224435.1ContigJAAENL000000000SAMN13632598
Bse_31
GCA_024225735.1ContigJAAEMH000000000SAMN13632568
Bse_1
GCA_024206375.1ContigJAAGZI000000000SAMN13632600
Bsp_1
GCA_024226715.1ContigJAAELJ000000000SAMN13632543
Bpl_2
GCA_024231995.1ContigJAAEQA000000000SAMN13632671
Gpa_6
GCA_024225445.1ContigJAAEMP000000000SAMN13632576
Bse_9
GCA_024224595.1ContigJAAENI000000000SAMN13632595
Bse_28
GCA_024222895.1ContigJAAEOR000000000SAMN13632633
Cca_12
GCA_024228235.1ContigJAAETP000000000SAMN13632768
Vin_10
GCA_024244645.1ContigJAAEOH000000000SAMN13632623
Cca_2
GCA_024230315.1ContigJAAERO000000000SAMN13632712
Nau_7
GCA_024228155.1ContigJAAETS000000000SAMN13632771
Vin_13
GCA_024228005.1ContigJAAETU000000000SAMN13632773
Vin_15
GCA_024225035.1ContigJAAEMX000000000SAMN13632584
Bse_17
GCA_024226475.1ContigJAAELS000000000SAMN13632552
Bpl_11
GCA_024228355.1ContigJAAETN000000000SAMN13632766
Vin_8
GCA_024225675.1ContigJAAEMM000000000SAMN13632573
Bse_6
GCA_024231475.1ContigJAAEQM000000000SAMN13632683
Gpa_18
GCA_024227015.1ContigJAAELD000000000SAMN13632537
Bco_11
GCA_024244685.1ContigJAAEOJ000000000SAMN13632625
Cca_4
GCA_024222395.1ContigJAAEPE000000000SAMN13632646
Cli_2
GCA_024231755.1ContigJAAEQH000000000SAMN13632678
Gpa_13
GCA_024226635.1ContigJAAELM000000000SAMN13632546
Bpl_5
GCA_024229115.1ContigJAAEST000000000SAMN13632744
Ust_19
GCA_024231215.1ContigJAAEQR000000000SAMN13632688
Gpa_23
GCA_024226455.1ContigJAAELR000000000SAMN13632551
Bpl_10
GCA_024227475.1ContigJAAEUI000000000SAMN13632787
Vin_29
GCA_024227655.1ContigJAAEUD000000000SAMN13632782
Vin_24
GCA_024227755.1ContigJAAEUB000000000SAMN13632780
Vin_22
GCA_024228795.1ContigJAAETC000000000SAMN13632754
Ust_29
GCA_024229575.1ContigJAAESF000000000SAMN13632730
Ust_5
GCA_024229955.1ContigJAAERW000000000SAMN13632720
Nau_15
GCA_024232455.1ContigJAAEPR000000000SAMN13632660
Cli_16
GCA_024228715.1ContigJAAETD000000000SAMN13632756
Ust_31
GCA_024226015.1ContigJAAEMB000000000SAMN13632562
Bpl_21
GCA_024227065.1ContigJAAELE000000000SAMN13632538
Bco_12
GCA_024225475.1ContigJAAEMO000000000SAMN13632575
Bse_8
GCA_024206205.1ContigJAAGZQ000000000SAMN13632752
Ust_27
GCA_024225375.1ContigJAAEMQ000000000SAMN13632577
Bse_10
GCA_024225195.1ContigJAAEMV000000000SAMN13632582
Bse_15
GCA_024224305.1ContigJAAENO000000000SAMN13632602
Bsp_3
GCA_024228615.1ContigJAAETG000000000SAMN13632759
Vin_1
GCA_024232715.1ContigJAAEPK000000000SAMN13632653
Cli_9
GCA_024232675.1ContigJAAEPL000000000SAMN13632654
Cli_10
GCA_024229915.1ContigJAAERZ000000000SAMN13632723
Nau_18
GCA_024230175.1ContigJAAERR000000000SAMN13632715
Nau_10
GCA_024229315.1ContigJAAESO000000000SAMN13632739
Ust_14
GCA_024229395.1ContigJAAESM000000000SAMN13632737
Ust_12
GCA_024229655.1ContigJAAESE000000000SAMN13632729
Ust_4
GCA_024230235.1ContigJAAERQ000000000SAMN13632714
Nau_9
GCA_024230295.1ContigJAAERN000000000SAMN13632711
Nau_6
GCA_024230735.1ContigJAAERG000000000SAMN13632704
Gpa_39
GCA_024232935.1ContigJAAEPC000000000SAMN13632644
Cca_23
GCA_024231675.1ContigJAAEQJ000000000SAMN13632680
Gpa_15
GCA_024227915.1ContigJAAETX000000000SAMN13632776
Vin_18
GCA_024226535.1ContigJAAELP000000000SAMN13632549
Bpl_8
GCA_024223955.1ContigJAAENU000000000SAMN13632608
Bsp_9
GCA_024222815.1ContigJAAEOT000000000SAMN13632635
Cca_14
GCA_024225175.1ContigJAAEMU000000000SAMN13632581
Bse_14
GCA_024228965.1ContigJAAESY000000000SAMN13632749
Ust_24
GCA_024227175.1ContigJAAEKZ000000000SAMN13632533
Bco_7
GCA_024231795.1ContigJAAEQE000000000SAMN13632675
Gpa_10
GCA_024225525.1ContigJAAEML000000000SAMN13632572
Bse_5
GCA_024231495.1ContigJAAEQL000000000SAMN13632682
Gpa_17
GCA_024228935.1ContigJAAESX000000000SAMN13632748
Ust_23
GCA_024229515.1ContigJAAESI000000000SAMN13632733
Ust_8
GCA_024230755.1ContigJAAERD000000000SAMN13632701
Gpa_36
GCA_024229825.1ContigJAAESA000000000SAMN13632724
Nau_19
GCA_024230055.1ContigJAAERV000000000SAMN13632719
Nau_14
GCA_024226105.1ContigJAAELZ000000000SAMN13632560
Bpl_19
GCA_024228635.1ContigJAAETE000000000SAMN13632757
Ust_32
GCA_024224495.1ContigJAAENJ000000000SAMN13632596
Bse_29
GCA_024223015.1ContigJAAEOM000000000SAMN13632628
Cca_7
GCA_024223425.1ContigJAAEOE000000000SAMN13632620
Bsp_21
GCA_024227555.1ContigJAAEUH000000000SAMN13632786
Vin_28
GCA_024230515.1ContigJAAERJ000000000SAMN13632707
Nau_2
GCA_024224295.1ContigJAAENN000000000SAMN13632601
Bsp_2
GCA_024230155.1ContigJAAERU000000000SAMN13632718
Nau_13
GCA_024229755.1ContigJAAESC000000000SAMN13632727
Ust_2
GCA_024225595.1ContigJAAEMJ000000000SAMN13632570
Bse_3
GCA_024227215.1ContigJAAELA000000000SAMN13632534
Bco_8
GCA_024229495.1ContigJAAESJ000000000SAMN13632734
Ust_9
GCA_024230555.1ContigJAAERH000000000SAMN13632705
Gpa_40
GCA_024230675.1ContigJAAERE000000000SAMN13632702
Gpa_37
GCA_024231195.1ContigJAAEQQ000000000SAMN13632687
Gpa_22
GCA_024230855.1ContigJAAERA000000000SAMN13632698
Gpa_33
GCA_024229695.1ContigJAAESD000000000SAMN13632728
Ust_3
GCA_024229055.1ContigJAAESU000000000SAMN13632745
Ust_20
GCA_024229275.1ContigJAAESQ000000000SAMN13632741
Ust_16
GCA_024231955.1ContigJAAEPZ000000000SAMN13632670
Gpa_5
GCA_024231905.1ContigJAAEQC000000000SAMN13632673
Gpa_8
GCA_024231775.1ContigJAAEQG000000000SAMN13632677
Gpa_12
GCA_024231415.1ContigJAAEQO000000000SAMN13632685
Gpa_20
GCA_024231375.1ContigJAAEQP000000000SAMN13632686
Gpa_21
GCA_024231315.1ContigJAAEQU000000000SAMN13632691
Gpa_26
GCA_024226735.1ContigJAAELL000000000SAMN13632545
Bpl_4
GCA_024226295.1ContigJAAELV000000000SAMN13632556
Bpl_15
GCA_024226255.1ContigJAAELU000000000SAMN13632554
Bpl_13
GCA_024226335.1ContigJAAELY000000000SAMN13632559
Bpl_18
GCA_024226315.1ContigJAAELT000000000SAMN13632553
Bpl_12
GCA_024226515.1ContigJAAELQ000000000SAMN13632550
Bpl_9
GCA_024225935.1ContigJAAEMG000000000SAMN13632567
Bpl_26
GCA_024226235.1ContigJAAELW000000000SAMN13632557
Bpl_16
GCA_024228395.1ContigJAAETM000000000SAMN13632765
Vin_7
GCA_024228115.1ContigJAAETT000000000SAMN13632772
Vin_14
GCA_024228815.1ContigJAAESZ000000000SAMN13632750
Ust_25
GCA_024228495.1ContigJAAETJ000000000SAMN13632762
Vin_4
GCA_024228555.1ContigJAAETI000000000SAMN13632761
Vin_3
GCA_024227675.1ContigJAAEUG000000000SAMN13632785
Vin_27
GCA_024227815.1ContigJAAEUA000000000SAMN13632779
Vin_21
GCA_024227775.1ContigJAAEUC000000000SAMN13632781
Vin_23
GCA_024228075.1ContigJAAETW000000000SAMN13632775
Vin_17
GCA_024227455.1ContigJAAEUJ000000000SAMN13632788
Vin_30
GCA_024225875.1ContigJAAEMD000000000SAMN13632564
Bpl_23
GCA_024224895.1ContigJAAENE000000000SAMN13632591
Bse_24
GCA_024224995.1ContigJAAENB000000000SAMN13632588
Bse_21
GCA_024224975.1ContigJAAEMZ000000000SAMN13632586
Bse_19
GCA_024224655.1ContigJAAEND000000000SAMN13632590
Bse_23
GCA_024224455.1ContigJAAENM000000000SAMN13632599
Bse_32
GCA_024223445.1ContigJAAEOG000000000SAMN13632622
Cca_1
GCA_024223025.1ContigJAAEON000000000SAMN13632629
Cca_8
GCA_024222835.1ContigJAAEOU000000000SAMN13632636
Cca_15
GCA_024224085.1ContigJAAENR000000000SAMN13632605
Bsp_6
GCA_024224155.1ContigJAAENP000000000SAMN13632603
Bsp_4
GCA_024224135.1ContigJAAENS000000000SAMN13632606
Bsp_7
GCA_024223715.1ContigJAAEOA000000000SAMN13632614
Bsp_15
GCA_024223875.1ContigJAAENY000000000SAMN13632612
Bsp_13
GCA_024222485.1ContigJAAEPJ000000000SAMN13632652
Cli_8
GCA_024206195.1ContigJAAGZO000000000SAMN13632696
Gpa_31
GCA_023898545.1ContigJAAGZP000000000SAMN13632725
Nau_20
GCA_024449705.1ContigJAANSU000000000SAMN13632518
Bsp_unclassified
GCA_024449685.1ContigJAANST000000000SAMN13632517
Bse_unclassified
GCA_024449665.1ContigJAANSW000000000SAMN13632520
Cli_unclassified
GCA_024449465.1ContigJAANSR000000000SAMN13632515
Bco_unclassified
GCA_024449935.1ContigJAANSS000000000SAMN13632516
Bpl_unclassified
GCA_024449895.1ContigJAANSX000000000SAMN13632521
Gpa_unclassified
GCA_024449875.1ContigJAANSZ000000000SAMN13632523
Ust_unclassified
GCA_024449855.1ContigJAANSV000000000SAMN13632519
Cca_unclassified
GCA_024449835.1ContigJAANTA000000000SAMN13632524
Vin_unclassified
GCA_024449815.1ContigJAANSY000000000SAMN13632522
Nau_unclassified
SRA Data Details
ParameterValue
Data volume, Gbases1,070
Data volume, Tbytes0.44

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