Microcoleus Biofilm (ID 555798) - BioProject

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Accession: PRJNA555798 ID: 555798

Microcoleus Biofilm

Microcoleus Biofilm Raw sequence reads

Temporal study of cyanobacterial (Microcoleus) biofilm development.

Accession	PRJNA555798
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	biofilm metagenome[Taxonomy ID: 718308] unclassified sequences; metagenomes; ecological metagenomes; biofilm metagenome
Publications	Tee HS et al., "Tools for successful proliferation: diverse strategies of nutrient acquisition by a benthic cyanobacterium.", ISME J, 2020 Aug;14(8):2164-2178
Submission	Registration date: 8-Jun-2020 University of Auckland
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	247
WGS master	82
Genomic DNA	165
SRA Experiments	39
Publications
PubMed	1
PMC	1
Other datasets
BioSample	88
Assembly	82

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

76
6
82

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_013298335.1	JAAFHI000000000	SAMN12754324	bin29.maxbin.ball.068	Actinomycetota bacterium
GCA_013297645.1	JAAFHU000000000	SAMN12754325	bin52.metabat.ball.023	Actinomycetota bacterium
GCA_013297625.1	JAAFHT000000000	SAMN12754326	bin25.maxbin.ball.047	Actinomycetota bacterium
GCA_013298855.1	JAAFJJ000000000	SAMN12754379	bin47.metabat.b7b8b9.011	Aeromonas sp.
GCA_013298405.1	JAAFHP000000000	SAMN12754330	bin72.metabat.ball.175	Alphaproteobacteria bacterium
GCA_013298245.1	JAAFHD000000000	SAMN12754327	bin56.metabat.ball.055	Alphaproteobacteria bacterium
GCA_013298565.1	JAAFIC000000000	SAMN12754329	bin54.metabat.ball.029	Alphaproteobacteria bacterium
GCA_013297545.1	JAAFHH000000000	SAMN12754328	bin64.metabat.ball.128	Alphaproteobacteria bacterium
GCA_013299085.1	JAAFKC000000000	SAMN12754331	bin82.man.all	Bacillariophyta sp.
GCA_013298895.1	JAAFJM000000000	SAMN12754336	bin39.metabat.b16b17b19.001	Bacteroidota bacterium
GCA_013298545.1	JAAFIA000000000	SAMN12754335	bin17.concoct.ball.095	Bacteroidota bacterium
GCA_013298715.1	JAAFIQ000000000	SAMN12754334	bin65.metabat.ball.129	Bacteroidota bacterium
GCA_013298365.1	JAAFHL000000000	SAMN12754332	bin80.metabat.ball.221	Bacteroidota bacterium
GCA_013297775.1	JAAFIL000000000	SAMN12754333	bin55.metabat.ball.041	Bacteroidota bacterium
GCA_013298045.1	JAAFJI000000000	SAMN12754339	bin41.metabat.b16b17b19.074	Betaproteobacteria bacterium
GCA_013298455.1	JAAFHR000000000	SAMN12754341	bin71.metabat.ball.164	Betaproteobacteria bacterium
GCA_013298145.1	JAAFJO000000000	SAMN12754338	bin28.maxbin.ball.060	Betaproteobacteria bacterium
GCA_013298695.1	JAAFIS000000000	SAMN12754340	bin60.metabat.ball.085	Betaproteobacteria bacterium
GCA_013298765.1	JAAFJA000000000	SAMN12754337	bin22.maxbin.ball.038	Betaproteobacteria bacterium
GCA_013298955.1	JAAFJT000000000	SAMN12754347	bin35.maxbin.ball.156	Chitinophagales bacterium
GCA_013299105.1	JAAFJY000000000	SAMN12754349	bin19.concoct.ball.100	Chitinophagales bacterium
GCA_013298845.1	JAAFJN000000000	SAMN12754342	bin49.metabat.b7b8b9.064	Chitinophagales bacterium
GCA_013298665.1	JAAFIK000000000	SAMN12754344	bin73.metabat.ball.181	Chitinophagales bacterium
GCA_013298065.1	JAAFJD000000000	SAMN12754343	bin8.concoct.b1b2b5.064	Chitinophagales bacterium
GCA_013298445.1	JAAFHQ000000000	SAMN12754350	bin81.metabat.ball.237	Chitinophagales bacterium
GCA_013297995.1	JAAFJB000000000	SAMN12754345	bin46.metabat.b28b32b33.013	Chitinophagales bacterium
GCA_013297745.1	JAAFIM000000000	SAMN12754348	bin74.metabat.ball.186	Chitinophagales bacterium
GCA_013297585.1	JAAFHG000000000	SAMN12754346	bin34.maxbin.ball.153	Chitinophagales bacterium
GCA_013297575.1	JAAFHO000000000	SAMN12754351	bin15.concoct.ball.061	Chitinophagales bacterium
GCA_013297875.1	JAAFIW000000000	SAMN12754354	bin27.maxbin.ball.053	Comamonadaceae bacterium
GCA_013297985.1	JAAFIY000000000	SAMN12754355	bin68.metabat.ball.152	Comamonadaceae bacterium
GCA_013297925.1	JAAFJC000000000	SAMN12754353	bin24.maxbin.ball.043	Comamonadaceae bacterium
GCA_013298415.1	JAAFHN000000000	SAMN12754352	bin13.concoct.ball.012	Comamonadaceae bacterium
GCA_013299045.1	JAAFJX000000000	SAMN12754369	bin21.maxbin.ball.014	Cytophagales bacterium
GCA_013299115.1	JAAFKA000000000	SAMN12754368	bin6.concoct.b1b2b5.025	Cytophagales bacterium
GCA_013299025.1	JAAFJV000000000	SAMN12754359	bin12.concoct.b7b8b9.064	Cytophagales bacterium
GCA_013298985.1	JAAFJS000000000	SAMN12754371	bin4.concoct.b16b17b19.039	Cytophagales bacterium
GCA_013298865.1	JAAFJL000000000	SAMN12754364	bin50.metabat.ball.001	Cytophagales bacterium
GCA_013298205.1	JAAFJZ000000000	SAMN12754366	bin37.metabat.b11b12b14.043	Cytophagales bacterium
GCA_013298215.1	JAAFKE000000000	SAMN12754360	bin45.metabat.b28b32b33.011	Cytophagales bacterium
GCA_013298125.1	JAAFJP000000000	SAMN12754363	bin5.concoct.b16b17b19.071	Cytophagales bacterium
GCA_013298105.1	JAAFJK000000000	SAMN12754376	bin9.concoct.b28b32b33.015	Cytophagales bacterium
GCA_013298075.1	JAAFJG000000000	SAMN12754374	bin11.concoct.b28b32b33.026	Cytophagales bacterium
GCA_013298805.1	JAAFIU000000000	SAMN12754361	bin63.metabat.ball.114	Cytophagales bacterium
GCA_013298505.1	JAAFHY000000000	SAMN12754372	bin67.metabat.ball.151	Cytophagales bacterium
GCA_013298025.1	JAAFJE000000000	SAMN12754362	bin30.maxbin.ball.074	Cytophagales bacterium
GCA_013297945.1	JAAFIZ000000000	SAMN12754365	bin58.metabat.ball.058	Cytophagales bacterium
GCA_013297765.1	JAAFID000000000	SAMN12754373	bin33.maxbin.ball.127	Cytophagales bacterium
GCA_013297755.1	JAAFIH000000000	SAMN12754367	bin10.concoct.b28b32b33.016	Cytophagales bacterium
GCA_013297565.1	JAAFHK000000000	SAMN12754370	bin70.metabat.ball.157	Cytophagales bacterium
GCA_013297825.1	JAAFIN000000000	SAMN12754375	bin16.concoct.ball.085	Cytophagales bacterium
GCA_013298595.1	JAAFIG000000000	SAMN12754377	bin18.concoct.ball.099	Deinococcales bacterium
GCA_013298185.1	JAAFJQ000000000	SAMN12754378	bin20.maxbin.b16b17b19.023	Deinococcales bacterium
GCA_013298525.1	JAAFHW000000000	SAMN12754380	bin36.maxbin.ball.185	Flavobacteriia bacterium
GCA_013298775.1	JAAFIV000000000	SAMN12754382	bin62.metabat.ball.111	Ignavibacteria bacterium
GCA_013298375.1	JAAFHM000000000	SAMN12754381	bin51.metabat.ball.004	Ignavibacteria bacterium
GCA_013297885.1	JAAFIR000000000	SAMN12754383	bin32.maxbin.ball.103	Leptospirales bacterium
GCA_013298265.1	JAAFHE000000000	SAMN12754405	bin79.metabat.ball.212	Lysobacterales bacterium
GCA_013299165.1	JAAFKD000000000	SAMN12754385	bin38.metabat.b11b12b14.051	Microcoleus sp. bin38.metabat.b11b12b14.051
GCA_013299185.1	JAAFKG000000000	SAMN12754384	bin48.metabat.b7b8b9.023	Microcoleus sp. bin48.metabat.b7b8b9.023
GCA_013298325.1	JAAFHJ000000000	SAMN12754388	bin76.metabat.ball.192	Myxococcales bacterium
GCA_013298625.1	JAAFIF000000000	SAMN12754386	bin23.maxbin.ball.042	Myxococcales bacterium
GCA_013297655.1	JAAFHV000000000	SAMN12754387	bin26.maxbin.ball.049	Myxococcales bacterium
GCA_013298585.1	JAAFIE000000000	SAMN12754389	bin57.metabat.ball.056	Oligoflexia bacterium
GCA_013298815.1	JAAFJF000000000	SAMN12754391	bin7.concoct.b1b2b5.061	Polaromonas sp.
GCA_013298945.1	JAAFJR000000000	SAMN12754390	bin53.metabat.ball.024	Polaromonas sp.
GCA_013297865.1	JAAFIP000000000	SAMN12754392	bin75.metabat.ball.187	Polaromonas sp.
GCA_013297695.1	JAAFHX000000000	SAMN12754394	bin77.metabat.ball.199	Rhodobacterales bacterium
GCA_013298675.1	JAAFIJ000000000	SAMN12754395	bin42.metabat.b1b2b5.055	Rhodobacterales bacterium
GCA_013298485.1	JAAFHS000000000	SAMN12754393	bin44.metabat.b1b2b5.093	Rhodobacterales bacterium
GCA_013298645.1	JAAFII000000000	SAMN12754397	bin3.concoct.b16b17b19.020	Rhodoferax sp.
GCA_013297935.1	JAAFIX000000000	SAMN12754398	bin66.metabat.ball.149	Rhodoferax sp.
GCA_013297475.1	JAAFHF000000000	SAMN12754396	bin14.concoct.ball.051	Rhodoferax sp.
GCA_013299055.1	JAAFKB000000000	SAMN12754399	bin1.concoct.b11b12b14.030	Sphaerotilus sp.
GCA_013299175.1	JAAFKF000000000	SAMN12754400	bin69.metabat.ball.156	Sphaerotilus sp.
GCA_013298995.1	JAAFJW000000000	SAMN12754401	bin43.metabat.b1b2b5.090	Sphingobacteriales bacterium
GCA_013298745.1	JAAFIT000000000	SAMN12754403	bin40.metabat.b16b17b19.043	Sphingomonadales bacterium
GCA_013297725.1	JAAFIB000000000	SAMN12754402	bin78.metabat.ball.208	Sphingomonadales bacterium
GCA_013298875.1	JAAFJH000000000	SAMN12754358	bin2.concoct.b11b12b14.033	Synechococcales cyanobacterium bin2.concoct.b11b12b14.033
GCA_013298165.1	JAAFJU000000000	SAMN12754357	bin31.maxbin.ball.101	Synechococcales cyanobacterium bin31.maxbin.ball.101
GCA_013297675.1	JAAFHZ000000000	SAMN12754356	bin59.metabat.ball.084	Synechococcales cyanobacterium bin59.metabat.ball.084
GCA_013297845.1	JAAFIO000000000	SAMN12754404	bin61.metabat.ball.088	Verrucomicrobiales bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	86
Data volume, Mbytes	56251

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Microcoleus Biofilm

Microcoleus Biofilm Raw sequence reads

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