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Accession: PRJNA272922 ID: 272922

Bacteria

Biodegradation of isoprene in the terrestrial and marine environment

See Genome Information for Rhodococcus
Although isoprene is emitted from the biosphere in amounts similar to methane, we know very little of its biodegradation. More...
AccessionPRJNA272922
Data TypeGenome sequencing and assembly
ScopeMultispecies
Publications (total 6)
  • Gibson L et al., "Complete Genome of Isoprene Degrading Nocardioides sp. WS12.", Microorganisms, 2020 Jun 12;8(6)
More...
SubmissionRegistration date: 6-Mar-2015
University of East Anglia
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)337038
WGS master261
Genomic DNA2
SRA Experiments88
Protein Sequences1164798
Publications
PubMed6
PMC6
Other datasets
BioSample367
Assembly263
Assembly details:
Assembly levelNumber of Assemblies
2
154
107
263
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_004145975.1ScaffoldSDXX00000000
SAMN10678485
-
GCA_004193435.1ScaffoldSDXW00000000
SAMN10678484
-
GCA_004211185.1ContigSDXY00000000
SAMN10678486
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GCA_004210805.1ContigSDXZ00000000
SAMN10678487
-
GCA_004210695.1ContigSDYA00000000
SAMN10678488
-
GCA_004146005.1ScaffoldSDYB00000000
SAMN10678489
-
GCA_004173295.1ScaffoldSDYC00000000
SAMN10678490
-
GCA_004146305.1ScaffoldSDYD00000000
SAMN10678491
-
GCA_004145575.1ScaffoldSDYH00000000
SAMN10678495
-
GCA_004145565.1ScaffoldSDYF00000000
SAMN10678493
-
GCA_004145155.1ScaffoldSDYG00000000
SAMN10678494
-
GCA_004145145.1ContigSDYI00000000
SAMN10678496
-
GCA_004173075.1ScaffoldSDYE00000000
SAMN10678492
-
GCA_004173895.1ContigSDYK00000000
SAMN10678498
-
GCA_004193445.1ContigSDYJ00000000
SAMN10678497
-
GCA_004173095.1ContigSDZE00000000
SAMN10678521
-
GCA_004210755.1ScaffoldSDZI00000000
SAMN10678525
-
GCA_004210735.1ContigSDZL00000000
SAMN10678528
-
GCA_004211195.1ScaffoldSDZG00000000
SAMN10678523
-
GCA_004211175.1ScaffoldSDZH00000000
SAMN10678524
-
GCA_004210795.1ContigSDZF00000000
SAMN10678522
-
GCA_004295765.1ContigSDZJ00000000
SAMN10678526
-
GCA_004295745.1ContigSDZK00000000
SAMN10678527
-
GCA_004145445.1ContigSDZM00000000
SAMN10678529
-
GCA_004145455.1ScaffoldSDZN00000000
SAMN10678530
-
GCA_004145105.1ScaffoldSDZQ00000000
SAMN10678533
-
GCA_004144935.1ContigSDZP00000000
SAMN10678532
-
GCA_004145995.1ScaffoldSDZO00000000
SAMN10678531
-
GCA_004145025.1ScaffoldSDZU00000000
SAMN10678537
-
GCA_004145065.1ContigSDZT00000000
SAMN10678536
-
GCA_004145035.1ScaffoldSEAB00000000
SAMN10678544
-
GCA_004145255.1ContigSDZR00000000
SAMN10678534
-
GCA_004145245.1ScaffoldSDZS00000000
SAMN10678535
-
GCA_004145475.1ScaffoldSDZW00000000
SAMN10678539
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GCA_004145465.1ContigSDZX00000000
SAMN10678540
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GCA_004193475.1ScaffoldSDZV00000000
SAMN10678538
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GCA_004193255.1ScaffoldSEAF00000000
SAMN10678548
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GCA_004173865.1ScaffoldSEAE00000000
SAMN10678547
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GCA_004173845.1ContigSEAK00000000
SAMN10678553
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GCA_004173555.1ContigSEAG00000000
SAMN10678549
-
GCA_004173525.1ScaffoldSEAH00000000
SAMN10678550
-
GCA_004173495.1ScaffoldSEAJ00000000
SAMN10678552
-
GCA_004172945.1ScaffoldSDZY00000000
SAMN10678541
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GCA_004173355.1ContigSEAD00000000
SAMN10678546
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GCA_004173335.1ScaffoldSEAA00000000
SAMN10678543
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GCA_004173255.1ContigSDZZ00000000
SAMN10678542
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GCA_004173235.1ContigSEAC00000000
SAMN10678545
-
GCA_004174635.1ScaffoldSEAI00000000
SAMN10678551
-
GCA_004145215.1ContigSEAL00000000
SAMN10678554
-
GCA_004296125.1ScaffoldSEAM00000000
SAMN10678555
-
GCA_004211035.1ContigSEAN00000000
SAMN10678556
-
GCA_004210875.1ScaffoldSEAO00000000
SAMN10678557
-
GCA_004144705.1ContigSEBA00000000
SAMN10678569
-
GCA_004144695.1ContigSEAZ00000000
SAMN10678568
-
GCA_004145485.1ScaffoldSEAQ00000000
SAMN10678559
-
GCA_004145195.1ContigSEAP00000000
SAMN10678558
-
GCA_004144945.1ContigSEAT00000000
SAMN10678562
-
GCA_004144875.1ScaffoldSEAV00000000
SAMN10678564
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GCA_004144845.1ScaffoldSEAX00000000
SAMN10678566
-
GCA_004144925.1ContigSEAU00000000
SAMN10678563
-
GCA_004145015.1ContigSEAR00000000
SAMN10678560
-
GCA_004145005.1ContigSEBB00000000
SAMN10678570
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GCA_004144865.1ContigSEAY00000000
SAMN10678567
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GCA_004172925.1ContigSEAW00000000
SAMN10678565
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GCA_004173945.1ScaffoldSEAS00000000
SAMN10678561
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GCA_004173145.1ContigSEBC00000000
SAMN10678571
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GCA_004172875.1ScaffoldSEBD00000000
SAMN10678572
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GCA_004173315.1ScaffoldSEBE00000000
SAMN10678573
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GCA_004144855.1ContigSEBF00000000
SAMN10678574
-
GCA_004144775.1ScaffoldSEBH00000000
SAMN10678576
-
GCA_004145185.1ScaffoldSEBG00000000
SAMN10678575
-
GCA_004144785.1ScaffoldSEBI00000000
SAMN10678577
-
GCA_004145115.1ScaffoldSEBK00000000
SAMN10678579
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GCA_004295795.1ContigSEBR00000000
SAMN10678586
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GCA_004295775.1ScaffoldSEBO00000000
SAMN10678583
-
GCA_004296145.1ScaffoldSEBM00000000
SAMN10678581
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GCA_004211385.1ScaffoldSEBP00000000
SAMN10678584
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GCA_004210885.1ContigSEBQ00000000
SAMN10678585
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GCA_004210845.1ScaffoldSEBT00000000
SAMN10678588
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GCA_004211555.1ScaffoldSEBL00000000
SAMN10678580
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GCA_004211115.1ContigSEBN00000000
SAMN10678582
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GCA_004211145.1ContigSEBS00000000
SAMN10678587
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GCA_004172865.1ContigSEBV00000000
SAMN10678590
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GCA_004173475.1ContigSEBU00000000
SAMN10678589
-
GCA_003797825.1ContigRKME00000000
SAMN10354926
OPL2
GCA_002043085.1ContigMVPX00000000
SAMN06349348
i37
GCA_004210645.1ScaffoldSEBW00000000
SAMN10678591
-
GCA_004296155.1ScaffoldSECA00000000
SAMN10678595
-
GCA_004210835.1ScaffoldSEBY00000000
SAMN10678593
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GCA_004211085.1ScaffoldSECE00000000
SAMN10678599
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GCA_004211105.1ScaffoldSEBX00000000
SAMN10678592
-
GCA_004211075.1ScaffoldSECD00000000
SAMN10678598
-
GCA_004211055.1ScaffoldSECC00000000
SAMN10678597
-
GCA_004211375.1ScaffoldSECB00000000
SAMN10678596
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GCA_004211675.1ScaffoldSEBZ00000000
SAMN10678594
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GCA_004211635.1ScaffoldSECF00000000
SAMN10678600
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GCA_004144615.1ContigSEEN00000000
SAMN10678661
-
GCA_004144595.1ContigSEEM00000000
SAMN10678660
-
GCA_004144385.1ScaffoldSEEJ00000000
SAMN10678657
-
GCA_004144345.1ContigSEEL00000000
SAMN10678659
-
GCA_004144635.1ContigSEEK00000000
SAMN10678658
-
GCA_004144755.1ScaffoldSEEI00000000
SAMN10678656
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GCA_004143935.1ScaffoldSEHA00000000
SAMN10678726
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GCA_004143945.1ContigSEHB00000000
SAMN10678727
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GCA_004193375.1ScaffoldSEHD00000000
SAMN10678729
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GCA_004173415.1ContigSEHC00000000
SAMN10678728
-
GCA_004174535.1ScaffoldSEHE00000000
SAMN10678730
-
GCA_004295825.1ScaffoldSECG00000000
SAMN10678601
-
GCA_004144665.1ContigSEBJ00000000
SAMN10678578
-
GCA_004144985.1ContigSECH00000000
SAMN10678602
-
GCA_004295875.1ScaffoldSECI00000000
SAMN10678603
-
GCA_004210465.1ScaffoldSECJ00000000
SAMN10678604
-
GCA_004173455.1ContigSECL00000000
SAMN10678606
-
GCA_004193265.1ScaffoldSECK00000000
SAMN10678605
-
GCA_002043095.1ScaffoldMVOC00000000
SAMN06349362
AT1
GCA_004173515.1ContigSECN00000000
SAMN10678608
-
GCA_004173885.1ScaffoldSECO00000000
SAMN10678609
-
GCA_004173805.1ScaffoldSECM00000000
SAMN10678607
-
GCA_004193285.1ContigSECP00000000
SAMN10678610
-
GCA_004144535.1ScaffoldSECR00000000
SAMN10678612
-
GCA_004144565.1ScaffoldSECQ00000000
SAMN10678611
-
GCA_014108865.1Complete genomeSAMN15030414
WS12
GCA_004211435.1ContigSECS00000000
SAMN10678613
-
GCA_004144525.1ScaffoldSECW00000000
SAMN10678618
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GCA_004144415.1ScaffoldSDXV00000000
SAMN10678616
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GCA_004144515.1ScaffoldSECX00000000
SAMN10678619
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GCA_004144505.1ContigSECY00000000
SAMN10678620
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GCA_004144745.1ScaffoldSECU00000000
SAMN10678615
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GCA_004144765.1ScaffoldSECT00000000
SAMN10678614
-
GCA_004193485.1ScaffoldSECV00000000
SAMN10678617
-
GCA_004295855.1ContigSECZ00000000
SAMN10678621
-
GCA_004296135.1ScaffoldSEDC00000000
SAMN10678624
-
GCA_004295955.1ScaffoldSEDI00000000
SAMN10678630
-
GCA_004295975.1ScaffoldSEDN00000000
SAMN10678635
-
GCA_004295935.1ScaffoldSEDH00000000
SAMN10678629
-
GCA_004295885.1ContigSEDG00000000
SAMN10678628
-
GCA_004295895.1ContigSEDF00000000
SAMN10678627
-
GCA_004296115.1ScaffoldSEDJ00000000
SAMN10678631
-
GCA_004210945.1ScaffoldSEDE00000000
SAMN10678626
-
GCA_004210715.1ContigSEDB00000000
SAMN10678623
-
GCA_004211485.1ScaffoldSEDA00000000
SAMN10678622
-
GCA_004211475.1ScaffoldSEDP00000000
SAMN10678637
-
GCA_004211015.1ScaffoldSEDL00000000
SAMN10678633
-
GCA_004211465.1ScaffoldSEDK00000000
SAMN10678632
-
GCA_004211455.1ContigSEDM00000000
SAMN10678634
-
GCA_004211595.1ContigSEDO00000000
SAMN10678636
-
GCA_004211415.1ScaffoldSEDD00000000
SAMN10678625
-
GCA_004173825.1ScaffoldSEDQ00000000
SAMN10678638
-
GCA_004173435.1ScaffoldSEDV00000000
SAMN10678643
-
GCA_004173165.1ScaffoldSEDS00000000
SAMN10678640
-
GCA_004173425.1ContigSEEA00000000
SAMN10678648
-
GCA_004174595.1ScaffoldSEDR00000000
SAMN10678639
-
GCA_004174575.1ScaffoldSEDU00000000
SAMN10678642
-
GCA_004174565.1ScaffoldSEDY00000000
SAMN10678646
-
GCA_004176075.1ScaffoldSEDZ00000000
SAMN10678647
-
GCA_004193275.1ScaffoldSEDT00000000
SAMN10678641
-
GCA_004193325.1ScaffoldSEDW00000000
SAMN10678644
-
GCA_004193315.1ScaffoldSEDX00000000
SAMN10678645
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GCA_004210515.1ScaffoldSEEC00000000
SAMN10678650
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GCA_004210495.1ScaffoldSEED00000000
SAMN10678651
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GCA_004210575.1ScaffoldSEEE00000000
SAMN10678652
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GCA_004210425.1ContigSEEB00000000
SAMN10678649
-
GCA_004210485.1ContigSEEF00000000
SAMN10678653
-
GCA_003797765.1ContigRKMB00000000
SAMN10354891
WS9
GCA_004144655.1ScaffoldSEEH00000000
SAMN10678655
-
GCA_004144435.1ScaffoldSEEG00000000
SAMN10678654
-
GCA_004296005.1ContigSEEO00000000
SAMN10678662
-
GCA_004295995.1ContigSEEQ00000000
SAMN10678664
-
GCA_004210765.1ContigSEEP00000000
SAMN10678663
-
GCA_004211575.1ContigSEER00000000
SAMN10678665
-
GCA_004211695.1ScaffoldSEEV00000000
SAMN10678669
-
GCA_004211705.1ContigSEEU00000000
SAMN10678668
-
GCA_004211745.1ContigSEET00000000
SAMN10678667
-
GCA_004211255.1ScaffoldSEES00000000
SAMN10678666
-
GCA_002300195.1ScaffoldNSDX00000000
SAMN07511352
ACPA1
GCA_002300185.1ScaffoldNSDY00000000
SAMN07511353
ACPA4
GCA_002300155.1ScaffoldNSDZ00000000
SAMN07511354
ACS1
GCA_000949305.1ContigJYOP00000000SAMN03329995
AD45
GCA_003023755.1ScaffoldPYHL00000000
SAMN08723114
AD45-ID
GCA_001583455.1ScaffoldLTCZ00000000
SAMN04516629
LB1
GCA_001555475.1ScaffoldLSBM00000000
SAMN04448250
SC4
GCA_003797745.1ContigRKLZ00000000
SAMN10352903
WS1
GCA_003797085.1ScaffoldRKMA00000000
SAMN10353455
WS3
GCA_006543605.1ContigRRBB00000000
SAMN10354867
WS4
GCA_006543615.1ContigSCFU00000000
SAMN10354913
WS7
GCA_004144375.1ContigSEEW00000000
SAMN10678670
-
GCA_004144445.1ScaffoldSEEX00000000
SAMN10678671
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GCA_004210365.1ScaffoldSEFC00000000
SAMN10678676
-
GCA_004210455.1ScaffoldSEFA00000000
SAMN10678674
-
GCA_004210595.1ScaffoldSEFB00000000
SAMN10678675
-
GCA_004211235.1ScaffoldSEEY00000000
SAMN10678672
-
GCA_004211355.1ContigSEEZ00000000
SAMN10678673
-
GCA_004211335.1ContigSEFD00000000
SAMN10678677
-
GCA_004193395.1ScaffoldSEFJ00000000
SAMN10678683
-
GCA_004193515.1ScaffoldSEFF00000000
SAMN10678679
-
GCA_004172845.1ContigSEFG00000000
SAMN10678680
-
GCA_004172855.1ContigSEFE00000000
SAMN10678678
-
GCA_004176105.1ScaffoldSEFK00000000
SAMN10678684
-
GCA_004144285.1ScaffoldSEFI00000000
SAMN10678682
-
GCA_004144265.1ScaffoldSEFH00000000
SAMN10678681
-
GCA_004144245.1ScaffoldSEFS00000000
SAMN10678692
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GCA_004144165.1ScaffoldSEFQ00000000
SAMN10678690
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GCA_004144185.1ContigSEFP00000000
SAMN10678689
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GCA_004144175.1ContigSEFT00000000
SAMN10678693
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GCA_004144295.1ScaffoldSEFR00000000
SAMN10678691
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GCA_004144275.1ScaffoldSEFO00000000
SAMN10678688
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GCA_004144365.1ScaffoldSEFN00000000
SAMN10678687
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GCA_004144425.1ScaffoldSEFL00000000
SAMN10678685
-
GCA_004174545.1ScaffoldSEFM00000000
SAMN10678686
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GCA_004173175.1ScaffoldSEFW00000000
SAMN10678696
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GCA_004173185.1ContigSEFZ00000000
SAMN10678699
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GCA_004193535.1ScaffoldSEFY00000000
SAMN10678698
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GCA_004144105.1ScaffoldSEFV00000000
SAMN10678695
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GCA_004144195.1ContigSEFX00000000
SAMN10678697
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GCA_004144045.1ContigSEFU00000000
SAMN10678694
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GCA_004143965.1ContigSEGA00000000
SAMN10678700
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GCA_004211655.1ScaffoldSEGE00000000
SAMN10678704
-
GCA_004210935.1ContigSEGB00000000
SAMN10678701
-
GCA_004296055.1ScaffoldSEGF00000000
SAMN10678705
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GCA_004296035.1ContigSEGD00000000
SAMN10678703
-
GCA_004296215.1ContigSEGC00000000
SAMN10678702
-
GCA_003797775.2Complete genomeSAMN10354916
OPL5
GCA_004144035.1ContigSEGG00000000
SAMN10678706
-
GCA_004210345.1ContigSEGQ00000000
SAMN10678716
-
GCA_004211305.1ContigSEGI00000000
SAMN10678708
-
GCA_004211585.1ScaffoldSEGO00000000
SAMN10678714
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GCA_004210915.1ContigSEGS00000000
SAMN10678718
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GCA_004211245.1ContigSEGN00000000
SAMN10678713
-
GCA_004210585.1ContigSEGR00000000
SAMN10678717
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GCA_004210565.1ContigSEGP00000000
SAMN10678715
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GCA_004211295.1ScaffoldSEGJ00000000
SAMN10678709
-
GCA_004210995.1ContigSEGH00000000
SAMN10678707
-
GCA_004210965.1ContigSEGM00000000
SAMN10678712
-
GCA_004296065.1ContigSEGT00000000
SAMN10678719
-
GCA_004296095.1ContigSEGL00000000
SAMN10678711
-
GCA_004296235.1ContigSEGK00000000
SAMN10678710
-
GCA_003014875.1ContigPXZZ00000000
SAMN08723039
WS11
GCA_004143955.1ContigSEGZ00000000
SAMN10678725
-
GCA_004143925.1ScaffoldSEGX00000000
SAMN10678723
-
GCA_004144025.1ScaffoldSEGY00000000
SAMN10678724
-
GCA_004144115.1ScaffoldSEGU00000000
SAMN10678720
-
GCA_004144085.1ScaffoldSEGW00000000
SAMN10678722
-
GCA_004144095.1ScaffoldSEGV00000000
SAMN10678721
-
GCA_004210385.1ScaffoldSEHF00000000
SAMN10678731
-
GCA_004173275.1ScaffoldSDYM00000000
SAMN10678500
-
GCA_004173375.1ScaffoldSDYL00000000
SAMN10678499
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GCA_004146225.1ScaffoldSDYO00000000
SAMN10678502
-
GCA_004145385.1ScaffoldSDYR00000000
SAMN10678505
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GCA_004145285.1ScaffoldSDYQ00000000
SAMN10678504
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GCA_004145295.1ScaffoldSDYP00000000
SAMN10678503
-
GCA_004145555.1ScaffoldSDYN00000000
SAMN10678501
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GCA_004145545.1ScaffoldSDYX00000000
SAMN10678514
-
GCA_004145325.1ScaffoldSDYZ00000000
SAMN10678516
-
GCA_004145315.1ScaffoldSDZB00000000
SAMN10678518
-
GCA_004145305.1ScaffoldSDZC00000000
SAMN10678519
-
GCA_004145985.1ScaffoldSDZA00000000
SAMN10678517
-
GCA_004173115.1ScaffoldSDYV00000000
SAMN10678510
-
GCA_004173005.1ContigSDYU00000000
SAMN10678508
-
GCA_004172995.1ContigSDYW00000000
SAMN10678513
-
GCA_004172975.1ScaffoldSDYY00000000
SAMN10678515
-
GCA_004172935.1ScaffoldSDZD00000000
SAMN10678520
-
GCA_004173055.1ContigSDYS00000000
SAMN10678506
-
GCA_004173045.1ContigSDYT00000000
SAMN10678507
-
SRA Data Details
ParameterValue
Data volume, Gbases334
Data volume, Tbytes0.16

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