The Tara Pacific expedition (2016-2018) has applied a pan-ecosystemic approach on coral reefs throughout the Pacific Ocean, drawing an east-west transect from Panama to Papua New Guinea and a south-north transect from Australia to Japan, sampling corals around 32 island systems with a coherent and consistent set of protocols. This ambitious project aims at revealing a massive amount of novel biodiversity, shedding light on the complex links between genomes, transcriptomes, metabolomes, organisms, and ecosystem functions in modern coral reef systems. https://doi.org/10.1371/journal.pbio.3000483
| Accession | PRJEB47249 |
| Type | Umbrella project |
| Publications | - Rouan A et al., "Telomere DNA length regulation is influenced by seasonal temperature differences in short-lived but not in long-lived reef-building corals.", Nat Commun, 2023 Jun 1;14(1):3038
- Armstrong EJ et al., "Host transcriptomic plasticity and photosymbiotic fidelity underpin Pocillopora acclimatization across thermal regimes in the Pacific Ocean.", Nat Commun, 2023 Jun 1;14(1):3056
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| Submission | Registration date: 1-Sep-2021
Genoscope |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 7341 |
| WGS master | 3 |
| SRA Experiments | 9752 |
| Protein Sequences | 115347 |
| Publications |
| PubMed | 4 |
| PMC | 4 |
| Other datasets |
| BioSample | 6217 |
| Assembly | 3 |
This project encompasses the following 13 sub-projects:
| Project Type | Number of Projects |
| Other | 10 |
BioProject
accession | Name | Title |
|---|
| PRJEB74197 | 16S V4V5 sequencing of Tara Pacific crustose coralline algae (CCA) samples | 16S V4V5 sequencing of Tara Pacific crustose coralline algae (CCA) samples (Genoscope) | | PRJEB52328 | 16S V4V5 sequencing of Tara Pacific planktonic samples related to the islands | Amplicon sequencing of 16S rRNA of reef associated seawater samples of Tara Pacific expedition. (Genoscope) | | PRJEB52175 | 16SV4V5 amplification in coral samples | 16S V4V5 sequencing of Tara Pacific coral samples (Genoscope) | | PRJEB52300 | 16SV4V5 amplification of fish samples | 16S V4V5 sequencing of Tara Pacific fish samples. (Genoscope) | | PRJEB38899 | CKQ_BUH_BUM_CEB_BWA | Tara aerobiome biogeography (Genoscope) |
List all 10 'Other' projects...BioProject
accession | Name | Title |
|---|
| PRJEB74197 | 16S V4V5 sequencing of Tara Pacific crustose coralline algae (CCA) samples | 16S V4V5 sequencing of Tara Pacific crustose coralline algae (CCA) samples (Genoscope) | | PRJEB52328 | 16S V4V5 sequencing of Tara Pacific planktonic samples related to the islands | Amplicon sequencing of 16S rRNA of reef associated seawater samples of Tara Pacific expedition. (Genoscope) | | PRJEB52175 | 16SV4V5 amplification in coral samples | 16S V4V5 sequencing of Tara Pacific coral samples (Genoscope) | | PRJEB52300 | 16SV4V5 amplification of fish samples | 16S V4V5 sequencing of Tara Pacific fish samples. (Genoscope) | | PRJEB38899 | CKQ_BUH_BUM_CEB_BWA | Tara aerobiome biogeography (Genoscope) | | PRJEB32905 | CMX | Amplicon sequencing of 60 coral samples from Papua New Guinea (Genoscope) | | PRJEB52301 | Coral Dual Transcriptomic | Dual Transcriptomic sequencing of Tara Pacific coral samples. (Genoscope) | | PRJEB52368 | Coral Metagenomics | Metagenomic sequencing of Tara Pacific coral samples. (Genoscope) | | PRJEB52458 | ITS2 sequencing of Tara Pacific coral samples | ITS2 sequencing of Tara Pacific coral samples (Genoscope) | | PRJEB39048 | Tara aerobiome biogeography | Airborne Bacteria over Oceans shed light on Global Biogeodiversity Patterns (technion - israel institute...) |
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| Umbrella project | 1 |
BioProject
accession | Name | Title |
|---|
| PRJEB51539 | Sequencing data and assembly of three coral species : Porites lobata, Porites evermanni and Pocillopora cf. effusa. | Sequencing data and assembly of three coral species : Porites lobata, Porites evermanni and Pocillopora cf. effusa. (Genoscope) |
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| targeted loci | 2 |
BioProject
accession | Name | Title |
|---|
| PRJNA627741 | Actinopterygii | Barcoding the Fish of Futuna Island (Smithsonian) | | PRJNA430028 | Symbiodinium | Tara Pacific Symbiodinium ITS2 primer (Tara Pacific) |
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