The STR Sequencing Project (human) (ID 380127) - BioProject

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Accession: PRJNA380127 ID: 380127

The STR Sequencing Project (human)

The purpose of STRSeq is to facilitate the description of sequence-based alleles at the Short Tandem Repeat (STR) loci targeted in human identification assays. This collaborative effort of the international forensic DNA community, which has been endorsed by the executive board of the ISFG (International Society of Forensic Genetics), provides a framework for communication among laboratories. Each record contains: (a) observed sequence of an STR region, (b) annotation of the repeat region (“bracketing”) and flanking region polymorphisms, (c) information regarding the sequencing assay and data quality, and (d) backward compatible length-based allelic designation. Data within the umbrella project is organized into locus sub-projects, and can be accessed by browsing, BLAST searching, or ftp download at NCBI. For comments or questions, please contact strseq@nist.gov.

Accession	PRJNA380127
Type	Umbrella project
Publications (total 12) Less...	Steffen CR et al., "A multi-dimensional evaluation of the 'NIST 1032' sample set across four forensic Y-STR multiplexes.", Forensic Sci Int Genet, 2022 Mar;57:102655 More... Steffen CR et al., "A multi-dimensional evaluation of the 'NIST 1032' sample set across four forensic Y-STR multiplexes.", Forensic Sci Int Genet, 2022 Mar;57:102655 Hölzl-Müller P et al., "Exploring STR sequencing for forensic DNA intelligence databasing using the Austrian National DNA Database as an example.", Int J Legal Med, 2021 Nov;135(6):2235-2246 Guevara EK et al., "Autosomal STR and SNP characterization of populations from the Northeastern Peruvian Andes with the ForenSeq™ DNA Signature Prep Kit.", Forensic Sci Int Genet, 2021 May;52:102487 Moura-Neto R et al., "Evaluation of Promega PowerSeq™ Auto/Y systems prototype on an admixed sample of Rio de Janeiro, Brazil: Population data, sensitivity, stutter and mixture studies.", Forensic Sci Int Genet, 2021 Jul;53:102516 Borsuk LA et al., "Sequence-based US population data for the SE33 locus.", Electrophoresis, 2018 Nov;39(21):2694-2701 Phillips C et al., "Global patterns of STR sequence variation: Sequencing the CEPH human genome diversity panel for 58 forensic STRs using the Illumina ForenSeq DNA Signature Prep Kit.", Electrophoresis, 2018 Nov;39(21):2708-2724 Gettings KB et al., "Sequence-based U.S. population data for 27 autosomal STR loci.", Forensic Sci Int Genet, 2018 Nov;37:106-115 Devesse L et al., "Concordance of the ForenSeq™ system and characterisation of sequence-specific autosomal STR alleles across two major population groups.", Forensic Sci Int Genet, 2018 May;34:57-61 Gettings KB et al., "STRSeq: A catalog of sequence diversity at human identification Short Tandem Repeat loci.", Forensic Sci Int Genet, 2017 Nov;31:111-117 Wendt FR et al., "Flanking region variation of ForenSeq™ DNA Signature Prep Kit STR and SNP loci in Yavapai Native Americans.", Forensic Sci Int Genet, 2017 May;28:146-154 Novroski NMM et al., "Characterization of genetic sequence variation of 58 STR loci in four major population groups.", Forensic Sci Int Genet, 2016 Nov;25:214-226 Published online: Borsuk L et al., "Sequence-based U.S. population data for 7 X-STR loci", Forensic Science International: Reports, 2020;2 Less...
Submission	Registration date: 22-Mar-2017 National Institute of Standards and Technology
Related Resources	STRSeq STRidER
Relevance	Human Identification

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	2593
Publications
PubMed	11
PMC	5

The STR Sequencing Project (human) encompasses the following 4 sub-projects:

Project Type

Number of Projects

Umbrella project

BioProject accession	Name	Title
PRJNA380345	Homo sapiens	STRSeq Commonly Used Autosomal STR Loci (National Institute of Standards...)
PRJNA380346	Homo sapiens	STRSeq Alternate Autosomal STR Loci (National Institute of Standards...)
PRJNA380347	Homo sapiens	STRSeq Y-Chromosomal STR Loci (National Institute of Standards...)
PRJNA380348	Homo sapiens	STRSeq X-Chromosomal STR Loci (National Institute of Standards...)

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