Contains whole genome sequencing data acquired from bacterial isolates as part of NARMS, an interagency surveillance program that monitors antimicrobial resistance of foodborne pathogens.
| Accession | PRJNA290865 |
| Type | Umbrella project |
| Submission | Registration date: 24-Jul-2015
FDA |
| Related Resources | |
| Relevance | Environmental |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 120488 |
| WGS master | 88147 |
| Genomic DNA | 676 |
| SRA Experiments | 94403 |
| Protein Sequences | 1614390 |
| Publications |
| PubMed | 7 |
| PMC | 4 |
| Other datasets |
| BioSample | 94663 |
| Assembly | 88306 |
FDA NARMS encompasses the following 16 sub-projects:
| Project Type | Number of Projects |
| Genome sequencing |
6
5
4
15
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA761673 | No data links | CVM NARMS diversity expansion picks Genome sequencing and assembly | CVM NARMS diversity expansion picks Genome sequencing and assembly (FDA-CVM) | | PRJNA292664 | Complete genome | Campylobacter | CVM NARMS Campylobacter (FDA) | | PRJNA292668 | Contigs | Campylobacter | FSIS NARMS Campylobacter (FDA) | | PRJNA287430 | Contigs | Campylobacter | USDA-FSIS: Isolated strains of Campylobacter spp. genome sequencing (USDA FSIS) | | PRJNA726956 | No data links | Campylobacter | Campylobacter Genome sequencing and assembly (NARMS Project: Thakur Molecular...) | | PRJNA753134 | No data links | Campylobacter, e.coli, and salmonella | Campylobacter, e.coli, and salmonella (UC Davis NARMS submission...) | | PRJNA292665 | Complete genome | Enterococcus | CVM NARMS Enterococcus (FDA) | | PRJNA292669 | Complete genome | Enterococcus | FSIS NARMS Enterococcus (FDA) | | PRJNA292663 | Complete genome | Escherichia coli | CVM NARMS Escherichia coli (FDA) | | PRJNA292667 | Contigs | Escherichia coli | FSIS NARMS Escherichia coli (FDA) | | PRJNA725483 | No data links | Escherichia coli | NARMS retail meat isolates - North Carolina Genome sequencing and assembly (NARMS Project: Thakur Molecular...) | | PRJNA701285 | Contigs | FSIS NARMS Diversity Expansion Genome sequencing | FSIS NARMS Diversity Expansion Genome sequencing (NARMS Diversity Expansion...) | | PRJNA292661 | Complete genome | Salmonella enterica | CVM NARMS Salmonella (FDA) | | PRJNA292666 | Complete genome | Salmonella enterica | FSIS NARMS Salmonella (FDA) | | PRJNA590891 | Contigs | Vibrio, Escherichia coli, Staphylococcus, Pseudomonas, Aeromonas, Enterococcus | CVM NARMS Seafood (National Antimicrobial Resistance...) |
Less... |
| Umbrella project | 1 |
BioProject
accession | Name | Title |
|---|
| PRJNA884092 | E. coli, Enterococci, and Salmonella enterica | FDA CVM NARMS - EPA One Health Surface Water Study (FDA-CVM) |
|