SMRT and Illumina sequencing was conducted on a variety of clonal isolates, as well as both synthetic and real metagenomic samples, in order to develop novel methods for DNA methylation detection in metagenomic data.
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 108 |
| WGS master | 9 |
| Genomic DNA | 10 |
| SRA Experiments | 45 |
| Protein Sequences | 37932 |
| Publications |
| PubMed | 2 |
| PMC | 2 |
| Other datasets |
| BioSample | 27 |
| Assembly | 12 |
This project encompasses the following 7 sub-projects:
| Project Type | Number of Projects |
| Genome sequencing |
1
1
1
1
2
6
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA281410 | Complete genome | Multi-strain, long-read bacterial genome sequencing | Multi-strain, long-read bacterial genome sequencing (Icahn School of Medicine...) | | PRJNA390230 | SRA or Trace | Plasmid and host genomic SMRT sequencing of three bacterial strains | Plasmid and host genomic SMRT sequencing of three bacterial strains (Icahn School of Medicine...) | | PRJNA390229 | SRA or Trace | SMRT sequencing of three Escherichia coli strains from ATCC | SMRT sequencing of three Escherichia coli strains from ATCC (Icahn School of Medicine...) | | PRJNA390542 | Scaffolds | gut metagenome | SMRT sequencing of an adult mouse gut microbiome (Icahn School of Medicine...) | | PRJNA343144 | Contigs | human gut metagenome | Infant gut microbiome Metagenomic assembly (Mount Sinai School of Medicine) |
List all 6 'Genome sequencing' projects...BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA281410 | Complete genome | Multi-strain, long-read bacterial genome sequencing | Multi-strain, long-read bacterial genome sequencing (Icahn School of Medicine...) | | PRJNA390230 | SRA or Trace | Plasmid and host genomic SMRT sequencing of three bacterial strains | Plasmid and host genomic SMRT sequencing of three bacterial strains (Icahn School of Medicine...) | | PRJNA390229 | SRA or Trace | SMRT sequencing of three Escherichia coli strains from ATCC | SMRT sequencing of three Escherichia coli strains from ATCC (Icahn School of Medicine...) | | PRJNA390542 | Scaffolds | gut metagenome | SMRT sequencing of an adult mouse gut microbiome (Icahn School of Medicine...) | | PRJNA343144 | Contigs | human gut metagenome | Infant gut microbiome Metagenomic assembly (Mount Sinai School of Medicine) | | PRJNA343143 | Chromosomes | mixed sample | Mixture of 8 species: Escherichia coli MG1655, Bacteroides caccae ATCC 43185, Bacteroides ovatus ATCC 8483, Bacteroides thetaiotaomicron VPI-5482, Bacteroides vulgatus ATCC 8492, Collinsella aerofaciens ATCC 25986, Clostridium bolteae ATCC BAA-613, a (Mount Sinai School of Medicine) |
Less... |
| epigenomics | 1 |
|