ID 235618 - BioProject

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Accession: PRJNA235618 ID: 235618

TB-ARC - KRITH 2

See Genome Information for Mycobacterium tuberculosis

NIAID-funded study of Mycobacterium tuberculosis, analyzing over 200 strains from two patient cohorts from the province of KwaZulu-Natal (KZN) in South Africa. The overarching goal for this work is to obtain full genome sequence data from well characterized drug-resistant, MDR-TB, XDR-TB (extensively drug resistant TB), and TDR-TB (totally drug resistant TB) strains to understand the genomic patterns of drug resistance.

Accession	PRJNA235618
Type	Umbrella Comparative genomics project (Subtype:Comparative genomics)
Organism	Mycobacterium tuberculosis[Taxonomy ID: 1773] Bacteria; Actinomycetota; Actinomycetes; Mycobacteriales; Mycobacteriaceae; Mycobacterium; Mycobacterium tuberculosis complex; Mycobacterium tuberculosis
Submission	Registration date: 17-Jan-2014 Broad Institute
Related Resources	TB-ARC K-RITH KwaZulu-Natal at Broad Institute
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	14273
WGS master	182
SRA Experiments	513
Protein Sequences	728185
Other datasets
BioSample	220
Assembly	182

SRA Data Details

Parameter	Value
Data volume, Gbases	270
Data volume, Tbytes	0.14

This project encompasses the following 221 sub-projects:

Project Type

Number of Projects

Genome sequencing

Highest level of assembly :

Scaffolds
Contigs
SRA or Trace
Total

168
14
39
221

BioProject accession	Assembly level	Organism	Title
PRJNA235615	SRA or Trace	Mycobacterium tuberculosis	TB-ARC - KRITH 2 (Broad Institute)
PRJNA235563	SRA or Trace	Mycobacterium tuberculosis TKK_01_0095	TB-ARC - KRITH 2 (Broad Institute)
PRJNA235562	SRA or Trace	Mycobacterium tuberculosis TKK_02_0051_2	TB-ARC - KRITH 2 (Broad Institute)
PRJNA235395	Scaffolds	Mycobacterium tuberculosis TKK_03_0012	TB-ARC - KRITH 2 (Broad Institute)
PRJNA235396	SRA or Trace	Mycobacterium tuberculosis TKK_03_0014	TB-ARC - KRITH 2 (Broad Institute)

List all 221 'Genome sequencing' projects...

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TB-ARC - KRITH 2

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