ID 193500 - BioProject

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Accession: PRJNA193500 ID: 193500

Studying UTI Defensins

See Genome Information for Escherichia coli

NIAID-funded study to compare E. coli strains known to cause urinary tract infection (UTI) with similar isolates from human subjects who have never experienced UTI. The aim is to identify UTI-specific genes and allelic variation that can contribute to UTI.

Accession	PRJNA193500
Type	Umbrella Comparative genomics project (Subtype:Comparative genomics)
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Submission	Registration date: 20-Mar-2013 Broad Institute
Related Resources	E. coli UTI Defensins at Broad Institute
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	17703
WGS master	234
SRA Experiments	434
Protein Sequences	1116609
Other datasets
BioSample	238
Assembly	234

SRA Data Details

Parameter	Value
Data volume, Gbases	368
Data volume, Tbytes	0.21

This project encompasses the following 237 sub-projects:

Project Type

Number of Projects

Genome sequencing

Highest level of assembly :

Scaffolds
Contigs
SRA or Trace
Total

198
36
2
236

BioProject accession	Assembly level	Organism	Title
PRJNA157563	Scaffolds	Citrobacter sp. KTE151	Citrobacter sp. KTE151 Genome sequencing and assembly (Broad Institute)
PRJNA157557	Scaffolds	Citrobacter sp. KTE30	Citrobacter sp. KTE30 Genome sequencing and assembly (Broad Institute)
PRJNA157619	Scaffolds	Citrobacter sp. KTE32	Citrobacter sp. KTE32 Genome sequencing and assembly (Broad Institute)
PRJNA157549	Scaffolds	Escherichia coli KTE1	Escherichia coli KTE1 Genome sequencing and assembly (Broad Institute)
PRJNA157579	Scaffolds	Escherichia coli KTE10	Escherichia coli KTE10 Genome sequencing and assembly (Broad Institute)

List all 236 'Genome sequencing' projects...

Other

BioProject accession	Name	Title
PRJNA157073	UTI Defensins	UTI Defensins (Broad Institute)

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