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Accession: PRJNA13633 ID: 13633

Campylobacter

Comparison of virulence genes and structural differences of multiple Campylobacter genomes

See Genome Information for Campylobacter
Campylobacter. Members of this genus are one of the most common causes of bacterial gastroenteritis (campylobacteriosis). Usually the symptoms are abdominal pain, fever, diarrhea, and cramps, but the illness can sometimes be fatal and some infected individuals develop a syndrome (Guillain-Barre) in which the nerves connecting the spinal cord to the brain are damaged. C. jejuni is the main cause of campylobacteriosis, but other species can also cause infection, including C. coli, C. upsaliensis, and C. lari.

Comparison of these organisms helped elucidate some potential virulence mechanisms. C. jejuni strain RM1221, isolated from a chicken carcass, was compared to the previously sequenced C. jejuni strain NCTC 11168. Four large integrated elements were responsible for the major differences between the genomes of these two strains. More...

AccessionPRJNA13633
TypeUmbrella Comparative genomics project (Subtype:Comparative genomics)
OrganismCampylobacter[Taxonomy ID: 194]
Bacteria; Campylobacterota; Epsilonproteobacteria; Campylobacterales; Campylobacteraceae; Campylobacter
PublicationsFouts DE et al., "Major structural differences and novel potential virulence mechanisms from the genomes of multiple campylobacter species.", PLoS Biol, 2005 Jan;3(1):e15
SubmissionRegistration date: 1-Mar-2005
TIGR
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)64
WGS master2
Genomic DNA4
SRA Experiments20
Capillary Traces (Trace Archive)1
Protein Sequences8901
Publications
PubMed5
PMC3
Other datasets
BioSample11
Assembly5
SRA Data Details
ParameterValue
Data volume, Mbases91
Data volume, Mbytes2499
Campylobacter encompasses the following 5 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Complete genome
Scaffolds
Total

3
2
5
BioProject
accession
Assembly
level
OrganismTitle
PRJNA12516 ScaffoldsCampylobacter coli RM2228Leading cause of foodborne illnesses worldwide (TIGR)
PRJNA303 Complete genomeCampylobacter jejuni RM1221Leading cause of food poisoning (TIGR)
PRJNA8 Complete genomeCampylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819Leading cause of food poisoning (altered virulence strain) (Sanger Institute)
PRJNA12517 Complete genomeCampylobacter lari RM2100Foodborne pathogen that can cause gastroenteritis and bacteremia (TIGR)
PRJNA12518 ScaffoldsCampylobacter upsaliensis RM3195Human enteropathogen isolated from patient with Guillain-Barre syndrome (TIGR)

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