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Accession: PRJNA1093221 ID: 1093221

Orcas Island East Sound 22 day time series of the ocean microbiome

Orcas Island East Sound 22 day time series of the ocean microbiome Metagenome

The goal of this study is to investigate the interactions of a phytoplankton community and its microbiome on a 4-hour timescale to reveal emerging and predictive properties across an algal bloom and bust cycle and their molecular-level controls.

Samples of the microbiome from coastal waters were collected every 4 hours between the dates of May 27 to June 18 in 2021 at a depth of 2m in East Sound, WA (Lat: 48.6765, Long: -122.883233). Bacterial fractions were isolated from 1-2 L of 1um pre-filtered water on a 0.22 um (47mm diameter) polyethersulfone filter at 1:00, 5:00, 9:00, 13:00, 17:00, and 21:00 everyday. DNA was extracted using Qiagen DNeasy PowerWater kit following the manufacturer's instructions and sequenced by the Department of Energy (DOE) Joint Genome Institute (JGI) using Illumina technology.

AccessionPRJNA1093221
TypeUmbrella project
SubmissionRegistration date: 28-Mar-2024
DOE Joint Genome Institute
Related Resources
RelevanceEnvironmental
Locus Tag PrefixWNC55
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments129
Other datasets
BioSample137
SRA Data Details
ParameterValue
Data volume, Gbases3,694
Data volume, Tbytes1.23
Orcas Island East Sound 22 day time series of the ocean microbiome encompasses the following 137 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
SRA or Trace

1
BioProject
accession
Assembly
level
NameTitle
PRJNA1130528 SRA or TracePooled metagenome of seawater microbial communities from East Sound, Orcas Island, WA, USAPooled metagenome of seawater microbial communities from East Sound, Orcas Island, WA, USA (University of Washington)
metagenome136
BioProject
accession
OrganismTitle
PRJNA1088037seawater metagenomeMetatranscriptome of seawater eukaryotic communities from East Sound, Orcas Island, WA, USA - ORCAS_euks_20210616_20_09 (DOE Joint Genome Institute)
PRJNA1088036seawater metagenomeMetatranscriptome of seawater eukaryotic communities from East Sound, Orcas Island, WA, USA - ORCAS_euks_20210607_11_05 (DOE Joint Genome Institute)
PRJNA1088035seawater metagenomeMetatranscriptome of seawater eukaryotic communities from East Sound, Orcas Island, WA, USA - ORCAS_euks_20210529_02_17 (DOE Joint Genome Institute)
PRJNA1088034seawater metagenomeSeawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210611_15_17 metagenome (DOE Joint Genome Institute)
PRJNA1088033seawater metagenomeSeawater microbial communities from East Sound, Orcas Island, WA, USA - ORCAS_bact_20210611_15_13 metagenome (DOE Joint Genome Institute)
List all 136 'metagenome' projects...

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