permafrost metagenome (ID 680161) - BioProject

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Accession: PRJNA680161 ID: 680161

permafrost metagenome

Reconstruction of metagenome-assembled genomes from microorganisms in ancient Siberian permafrost

Exceptional preservation of DNA in ancient permafrost offers a unique opportunity to examine fossil and living microorganisms over geological timescales. More...

Accession	PRJNA680161
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	permafrost metagenome[Taxonomy ID: 1082480] unclassified sequences; metagenomes; ecological metagenomes; permafrost metagenome
Submission	Registration date: 15-Jan-2021 Princeton University
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	67
SRA Experiments	15
Other datasets
BioSample	85
Assembly	67

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

13
54
67

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_016650415.1	JAENVU000000000	SAMN16871418	3_4_m_bin14	Acidimicrobiia bacterium
GCA_016650365.1	JAENVV000000000	SAMN16871419	3_4_m_bin6	Acidimicrobiia bacterium
GCA_016649895.1	JAENWR000000000	SAMN16871441	5_8_m_bin22	Acidimicrobiia bacterium
GCA_016649975.1	JAENWN000000000	SAMN16871437	5_8_m_bin26	Actinomycetales bacterium
GCA_016649925.1	JAENWO000000000	SAMN16871438	5_8_m_bin7	Actinomycetales bacterium
GCA_016649855.1	JAENWQ000000000	SAMN16871440	5_8_m_bin21	Actinomycetota bacterium
GCA_016649525.1	JAENXM000000000	SAMN16871462	14_8_m_bin1	Actinomycetota bacterium
GCA_016650315.1	JAENVZ000000000	SAMN16871423	3_4_m_bin1	Alphaproteobacteria bacterium
GCA_016649505.1	JAENXN000000000	SAMN16871463	14_8_m_bin6	Anaerolineales bacterium
GCA_016650355.1	JAENVX000000000	SAMN16871421	3_4_m_bin10	Bacteroidia bacterium
GCA_016650335.1	JAENVY000000000	SAMN16871422	3_4_m_bin9	Bacteroidia bacterium
GCA_016650395.1	JAENVW000000000	SAMN16871420	3_4_m_bin8	Bacteroidia bacterium
GCA_016649475.1	JAENXP000000000	SAMN16871465	14_8_m_bin33	Burkholderiales bacterium
GCA_016649625.1	JAENXI000000000	SAMN16871458	14_8_m_bin19	Candidatus Bathyarchaeota archaeon
GCA_019894795.1	JAGXNV000000000	SAMN18946032	bin51	Candidatus Heimdallarchaeota archaeon
GCA_019894765.1	JAGXNT000000000	SAMN18946030	bin89	Candidatus Heimdallarchaeota archaeon
GCA_016649575.1	JAENXJ000000000	SAMN16871459	14_8_m_bin25	Candidatus Heimdallarchaeota archaeon
GCA_016649835.1	JAENWX000000000	SAMN16871447	5_8_m_bin13	Candidatus Paceibacterota bacterium
GCA_019894665.1	JAGXOC000000000	SAMN18946039	bin66	Candidatus Thorarchaeota archaeon
GCA_016650035.1	JAENWM000000000	SAMN16871436	5_8_m_bin12	Clostridium sp.
GCA_016650095.1	JAENWL000000000	SAMN16871435	5_8_m_bin11	Clostridium sp.
GCA_016649875.1	JAENWW000000000	SAMN16871446	5_8_m_bin16	Coriobacteriia bacterium
GCA_016649415.1	JAENXR000000000	SAMN16871467	14_8_m_bin5	Deltaproteobacteria bacterium
GCA_016649485.1	JAENXQ000000000	SAMN16871466	14_8_m_bin16	Desulfobacteraceae bacterium
GCA_016650295.1	JAENWA000000000	SAMN16871424	3_4_m_bin4	Desulfuromonadales bacterium
GCA_016650045.1	JAENWK000000000	SAMN16871434	5_8_m_bin14	Eubacteriaceae bacterium
GCA_016649785.1	JAENXB000000000	SAMN16871451	5_8_m_bin19	Flavobacteriaceae bacterium
GCA_016649745.1	JAENXD000000000	SAMN16871453	5_8_m_bin18	Flavobacteriaceae bacterium
GCA_016649715.1	JAENXC000000000	SAMN16871452	5_8_m_bin20	Flavobacteriaceae bacterium
GCA_016650445.1	JAENVS000000000	SAMN16871416	3_4_m_bin13	Frankiaceae bacterium
GCA_016649655.1	JAENXE000000000	SAMN16871454	5_8_m_bin23	Gemmatimonadaceae bacterium
GCA_016649455.1	JAENXO000000000	SAMN16871464	14_8_m_bin36	Gemmatimonadota bacterium
GCA_016650435.1	JAENVT000000000	SAMN16871417	3_4_m_bin11	Ilumatobacteraceae bacterium
GCA_016649585.1	JAENXH000000000	SAMN16871457	14_8_m_bin28	Methanosarcinales archaeon
GCA_016649675.1	JAENXG000000000	SAMN16871456	5_8_m_bin2	Methyloceanibacter sp.
GCA_016650275.1	JAENWB000000000	SAMN16871425	3_4_m_bin12	Nitrospiraceae bacterium
GCA_016650115.1	JAENWI000000000	SAMN16871432	5_8_m_bin4	Peptostreptococcaceae bacterium
GCA_016650175.1	JAENWG000000000	SAMN16871430	5_8_m_bin10	Peptostreptococcaceae bacterium
GCA_016650135.1	JAENWH000000000	SAMN16871431	5_8_m_bin17	Peptostreptococcaceae bacterium
GCA_016649995.1	JAENWJ000000000	SAMN16871433	5_8_m_bin8	Peptostreptococcaceae bacterium
GCA_016649665.1	JAENXF000000000	SAMN16871455	5_8_m_bin6	Polaromonas sp.
GCA_016649735.1	JAENXA000000000	SAMN16871450	5_8_m_bin9	Prolixibacteraceae bacterium
GCA_019894655.1	JAGXNZ000000000	SAMN18946036	bin21	Promethearchaeota archaeon
GCA_019894755.1	JAGXNW000000000	SAMN18946033	bin33	Promethearchaeota archaeon
GCA_019894975.1	JAGXNO000000000	SAMN18946025	bin60	Promethearchaeota archaeon
GCA_019894955.1	JAGXNQ000000000	SAMN18946027	bin12	Promethearchaeota archaeon
GCA_019894885.1	JAGXNP000000000	SAMN18946026	bin41	Promethearchaeota archaeon
GCA_019894875.1	JAGXNR000000000	SAMN18946028	bin8	Promethearchaeota archaeon
GCA_019894855.1	JAGXNS000000000	SAMN18946029	bin49	Promethearchaeota archaeon
GCA_019894835.1	JAGXNX000000000	SAMN18946034	bin24	Promethearchaeota archaeon
GCA_019894815.1	JAGXNU000000000	SAMN18946031	bin22	Promethearchaeota archaeon
GCA_019894735.1	JAGXOB000000000	SAMN18946038	bin48	Promethearchaeota archaeon
GCA_019894715.1	JAGXOA000000000	SAMN18946037	bin106	Promethearchaeota archaeon
GCA_019894685.1	JAGXNY000000000	SAMN18946035	bin40	Promethearchaeota archaeon
GCA_016649945.1	JAENWP000000000	SAMN16871439	5_8_m_bin27	Propionibacteriales bacterium
GCA_016649795.1	JAENWZ000000000	SAMN16871449	5_8_m_bin25	Proteiniphilum sp.
GCA_016649775.1	JAENWY000000000	SAMN16871448	5_8_m_bin3	Spirochaetaceae bacterium
GCA_016650235.1	JAENWC000000000	SAMN16871426	3_4_m_bin7	Terriglobia bacterium
GCA_016650215.1	JAENWF000000000	SAMN16871429	3_4_m_bin3	Thermoanaerobaculia bacterium
GCA_016650125.1	JAENWT000000000	SAMN16871443	5_8_m_bin15	Thermoleophilia bacterium
GCA_016650075.1	JAENWS000000000	SAMN16871442	5_8_m_bin5	Thermoleophilia bacterium
GCA_016649905.1	JAENWU000000000	SAMN16871444	5_8_m_bin24	Thermoleophilia bacterium
GCA_016650015.1	JAENWV000000000	SAMN16871445	5_8_m_bin1	Thermoleophilia bacterium
GCA_016649555.1	JAENXL000000000	SAMN16871461	14_8_m_bin27	Thermoleophilia bacterium
GCA_016649615.1	JAENXK000000000	SAMN16871460	14_8_m_bin7	Thermoleophilia bacterium
GCA_016650185.1	JAENWE000000000	SAMN16871428	3_4_m_bin2	Vicinamibacteria bacterium
GCA_016650245.1	JAENWD000000000	SAMN16871427	3_4_m_bin5	Vicinamibacteria bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	416
Data volume, Tbytes	0.17

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permafrost metagenome

Reconstruction of metagenome-assembled genomes from microorganisms in ancient Siberian permafrost

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