marine sediment metagenome (ID 562730) - BioProject

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Accession: PRJNA562730 ID: 562730

marine sediment metagenome

Hikurangi Margin methane seeps (HYDEE) Raw sequence reads

The HYDEE project explores the economic and ecological implications of gas hydrate production on the Hikurangi Margin, off the west coast of Te Ika a Māui/the North Island of New Zealand. More...

Accession	PRJNA562730
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	marine sediment metagenome[Taxonomy ID: 412755] unclassified sequences; metagenomes; ecological metagenomes; marine sediment metagenome
Grants	"HYDEE: Economic Opportunities and Environmental Implications of Energy Extraction from Gas Hydrates" (Grant ID C05X1708, New Zealand Ministry for Business, Innovation, and Employment)
Submission	Registration date: 21-May-2020 GNS Science
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	74
SRA Experiments	46
Other datasets
BioSample	117
Assembly	74

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

74
74

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_013139995.1	WSZU00000000	SAMN13287924	GLR109	Anaerolineales bacterium
GCA_013139005.1	WTBP00000000	SAMN13287971	GLR56	Anaerolineales bacterium
GCA_013139935.1	WSZX00000000	SAMN13287927	GLR113	Ardenticatenales bacterium
GCA_013139885.1	WSZZ00000000	SAMN13287929	GLR121	Bacteroidales bacterium
GCA_013138975.1	WTBR00000000	SAMN13287973	GLR59	Bacteroidales bacterium
GCA_013138635.1	WTCJ00000000	SAMN13287991	GLR91	Bacteroidales bacterium
GCA_013139075.1	WTBO00000000	SAMN13287970	GLR52	Calditrichia bacterium
GCA_013138965.1	WTBT00000000	SAMN13287975	GLR63	Candidatus Aegiribacteria sp.
GCA_013139435.1	WTAW00000000	SAMN13287952	GLR1792	Candidatus Aminicenantes bacterium
GCA_013139615.1	WTAM00000000	SAMN13287942	GLR161	Candidatus Aminicenantes bacterium
GCA_013139565.1	WTAN00000000	SAMN13287943	GLR162	Candidatus Aminicenantes bacterium
GCA_013139475.1	WTAV00000000	SAMN13287951	GLR1791	Candidatus Aminicenantes bacterium
GCA_013139625.1	WTAK00000000	SAMN13287940	GLR157	Candidatus Delongbacteria bacterium
GCA_013138765.1	WTCB00000000	SAMN13287983	GLR72	Candidatus Nanohaloarchaea archaeon
GCA_013139855.1	WTAA00000000	SAMN13287930	GLR123	Candidatus Scalindua sp.
GCA_013138615.1	WTCK00000000	SAMN13287992	GLR93	Candidatus Thorarchaeota archaeon
GCA_013138735.1	WTCE00000000	SAMN13287986	GLR79	Crocinitomix sp.
GCA_013138955.1	WTBS00000000	SAMN13287974	GLR6	Dehalococcoidales bacterium
GCA_013139055.1	WTBN00000000	SAMN13287969	GLR512	Dehalococcoidia bacterium
GCA_013139225.1	WTBG00000000	SAMN13287962	GLR311	Deltaproteobacteria bacterium
GCA_013138705.1	WTCF00000000	SAMN13287987	GLR83	Deltaproteobacteria bacterium
GCA_013139975.1	WSZS00000000	SAMN13287922	GLR105	Deltaproteobacteria bacterium
GCA_013138835.1	WTBZ00000000	SAMN13287981	GLR701	Desulfobacterales bacterium
GCA_013139195.1	WTBI00000000	SAMN13287964	GLR42	Desulfobacterales bacterium
GCA_013139175.1	WTBH00000000	SAMN13287963	GLR40	Desulfobacterales bacterium
GCA_013139125.1	WTBM00000000	SAMN13287968	GLR51	Desulfobulbaceae bacterium
GCA_013139415.1	WTAT00000000	SAMN13287949	GLR1684	Desulforhopalus sp.
GCA_013139495.1	WTAS00000000	SAMN13287948	GLR1681	Desulfovibrionaceae bacterium
GCA_013138655.1	WTCI00000000	SAMN13287990	GLR9	Desulfuromonadaceae bacterium
GCA_013139775.1	WTAD00000000	SAMN13287933	GLR144	Desulfuromonadales bacterium
GCA_013138995.1	WTBQ00000000	SAMN13287972	GLR57	Desulfuromusa sp.
GCA_013139955.1	WSZV00000000	SAMN13287925	GLR11	Draconibacterium sp.
GCA_013139255.1	WTBE00000000	SAMN13287960	GLR28	Flavobacteriaceae bacterium
GCA_013139585.1	WTAO00000000	SAMN13287944	GLR1623	Gammaproteobacteria bacterium
GCA_013139675.1	WTAJ00000000	SAMN13287939	GLR156	Gammaproteobacteria bacterium
GCA_013139305.1	WTBB00000000	SAMN13287957	GLR1862	Gammaproteobacteria bacterium
GCA_013139295.1	WTBC00000000	SAMN13287958	GLR1864	Gammaproteobacteria bacterium
GCA_013139395.1	WTAX00000000	SAMN13287953	GLR18	Gammaproteobacteria bacterium
GCA_013138795.1	WTCD00000000	SAMN13287985	GLR772	Gammaproteobacteria bacterium
GCA_013138755.1	WTCC00000000	SAMN13287984	GLR771	Gammaproteobacteria bacterium
GCA_013138865.1	WTBY00000000	SAMN13287980	GLR69	Helicobacteraceae bacterium
GCA_013139515.1	WTAR00000000	SAMN13287947	GLR166	Lutibacter sp.
GCA_013139525.1	WTAP00000000	SAMN13287945	GLR1625	Lysobacterales bacterium
GCA_013139875.1	WSZY00000000	SAMN13287928	GLR120	Mariprofundaceae bacterium
GCA_013138665.1	WTCG00000000	SAMN13287988	GLR86	Methanococcoides sp.
GCA_013139985.1	WSZT00000000	SAMN13287923	GLR107	Methanophagales archaeon
GCA_013139685.1	WTAI00000000	SAMN13287938	GLR1503	Methanosarcinaceae archaeon
GCA_013139715.1	WTAH00000000	SAMN13287937	GLR1502	Methanosarcinales archaeon
GCA_013138905.1	WTBU00000000	SAMN13287976	GLR651	Methanosarcinales archaeon
GCA_013138895.1	WTBV00000000	SAMN13287977	GLR652	Methanosarcinales archaeon
GCA_013138855.1	WTBX00000000	SAMN13287979	GLR68	Methylococcaceae bacterium
GCA_013139355.1	WTAZ00000000	SAMN13287955	GLR1854	Methylococcaceae bacterium
GCA_013139755.1	WTAG00000000	SAMN13287936	GLR15	Methylomarinum sp.
GCA_013139345.1	WTAY00000000	SAMN13287954	GLR1851	Methylophaga sp.
GCA_013139335.1	WTBA00000000	SAMN13287956	GLR1855	Methylophaga sp.
GCA_013139825.1	WTAC00000000	SAMN13287932	GLR143	Methyloprofundus sp.
GCA_013138595.1	WTCM00000000	SAMN13287994	GLR996	Methyloprofundus sp.
GCA_013138565.1	WTCL00000000	SAMN13287993	GLR992	Methyloprofundus sp.
GCA_013138555.1	WTCN00000000	SAMN13287995	GLR997	Methyloprofundus sp.
GCA_013139135.1	WTBJ00000000	SAMN13287965	GLR43	Mycoplasmataceae bacterium
GCA_013139265.1	WTBD00000000	SAMN13287959	GLR187	Myxococcales bacterium
GCA_013139205.1	WTBF00000000	SAMN13287961	GLR3	Nitrosomonadaceae bacterium
GCA_013139085.1	WTBL00000000	SAMN13287967	GLR48	Nitrosopumilus sp.
GCA_013139635.1	WTAL00000000	SAMN13287941	GLR160	Paracoccaceae bacterium
GCA_013138925.1	WTBW00000000	SAMN13287978	GLR66	Patescibacteria group bacterium
GCA_013139555.1	WTAQ00000000	SAMN13287946	GLR163	Sulfitobacter sp.
GCA_013139735.1	WTAF00000000	SAMN13287935	GLR147	Sulfurimonas sp.
GCA_013139765.1	WTAE00000000	SAMN13287934	GLR145	Sulfurovum sp.
GCA_013139115.1	WTBK00000000	SAMN13287966	GLR44	Thermoplasmata archaeon
GCA_013139815.1	WTAB00000000	SAMN13287931	GLR137	Woeseiaceae bacterium
GCA_013138675.1	WTCH00000000	SAMN13287989	GLR87	Woeseiaceae bacterium
GCA_013138805.1	WTCA00000000	SAMN13287982	GLR71	archaeon
GCA_013139905.1	WSZW00000000	SAMN13287926	GLR112	archaeon
GCA_013139425.1	WTAU00000000	SAMN13287950	GLR173	candidate division WOR-3 bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	63
Data volume, Mbytes	25142

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marine sediment metagenome

Hikurangi Margin methane seeps (HYDEE) Raw sequence reads

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