stromatolite metagenome (ID 612530) - BioProject

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Accession: PRJNA612530 ID: 612530

stromatolite metagenome

Peritidal stromatolite microbial consortia Metagenome

A comparative investigation of two geographically distinct South African peritidal stromatolite systems to identify key bacterial species responsible for accretion/formation.

Accession	PRJNA612530
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	stromatolite metagenome[Taxonomy ID: 496921] unclassified sequences; metagenomes; ecological metagenomes; stromatolite metagenome
Submission	Registration date: 5-Apr-2020 University of Wisconsin, Madison
Related Resources	Scripts used to curate data in this project
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	183
SRA Experiments	4
Other datasets
BioSample	195
Assembly	183

Assembly details:

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Assembly level

Number of Assemblies

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Contig

Total

26
157
183

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_012033135.1	JAAUPJ000000000	SAMN14376453	CSU_3_4	Acaryochloridaceae cyanobacterium CSU_3_4
GCA_012033145.1	JAAUPK000000000	SAMN14376455	CSU_5_19	Acaryochloridaceae cyanobacterium CSU_5_19
GCA_012032835.1	JAAUQC000000000	SAMN14376473	RL_2_7	Acaryochloridaceae cyanobacterium RL_2_7
GCA_012032135.1	JAAURS000000000	SAMN14376515	RU_4_10	Acaryochloridaceae cyanobacterium RU_4_10
GCA_012030735.1	JAAUUW000000000	SAMN14376597	SU_2_1	Acaryochloridaceae cyanobacterium SU_2_1
GCA_012034865.1	JAAUOM000000000	SAMN14376430	CRU_2_0	Acaryochloris sp. CRU_2_0
GCA_012032145.1	JAAURR000000000	SAMN14376514	RU_4_1	Acaryochloris sp. RU_4_1
GCA_012030725.1	JAAUVC000000000	SAMN14376603	SU_5_25	Acaryochloris sp. SU_5_25
GCA_012032485.1	JAAUSW000000000	SAMN14376545	SL_7_3	Acidobacteriota bacterium
GCA_012032235.1	JAAURL000000000	SAMN14376508	RU_1_3	Akkermansiaceae bacterium
GCA_012034855.1	JAAUOL000000000	SAMN14376429	CRU_1_6	Akkermansiaceae bacterium
GCA_012033605.1	JAAUPX000000000	SAMN14376468	RL_2_19	Alkalinema sp. RL_2_19
GCA_012031975.1	JAAUSA000000000	SAMN14376523	RU_4_3	Alkalinema sp. RU_4_3
GCA_012032115.1	JAAURT000000000	SAMN14376516	RU_4_12	Anaerolineae bacterium
GCA_012031655.1	JAAUUD000000000	SAMN14376578	SM2_1_5	Anaerolineae bacterium
GCA_012032935.1	JAAUPW000000000	SAMN14376467	RL_2_17	Anaerolineae bacterium
GCA_012032915.1	JAAUPY000000000	SAMN14376469	RL_2_21	Anaerolineae bacterium
GCA_012033035.1	JAAUPP000000000	SAMN14376460	RL_1_3	Anaerolineales bacterium
GCA_012032575.1	JAAUSP000000000	SAMN14376538	SL_3_1	Anaerolineales bacterium
GCA_012032435.1	JAAUPL000000000	SAMN14376456	CSU_5_57	Aquincola sp.
GCA_012030935.1	JAAUUZ000000000	SAMN14376600	SU_4_24	Aquincola sp.
GCA_012031335.1	JAAUTT000000000	SAMN14376568	SM1_6_29	Bacteroidales bacterium
GCA_012031315.1	JAAUTU000000000	SAMN14376569	SM1_6_31	Bacteroidales bacterium
GCA_012031745.1	JAAUTK000000000	SAMN14376559	SM1_3_8	Bacteroidales bacterium
GCA_012033435.1	JAAUQV000000000	SAMN14376492	RM1_3_31	Bacteroidales bacterium
GCA_012033245.1	JAAUSH000000000	SAMN14376530	RU_6_2	Bacteroidia bacterium
GCA_012033155.1	JAAUSU000000000	SAMN14376543	SL_6_1	Bacteroidia bacterium
GCA_012031955.1	JAAURZ000000000	SAMN14376522	RU_4_24	Bacteroidia bacterium
GCA_012033445.1	JAAUQW000000000	SAMN14376493	RM1_3_43	Bacteroidota bacterium
GCA_012032245.1	JAAURM000000000	SAMN14376509	RU_1_4	Blastocatellia bacterium
GCA_012033475.1	JAAUQU000000000	SAMN14376491	RM1_3_16	Blastochloris sp.
GCA_012031675.1	JAAUTX000000000	SAMN14376572	SM1_967_5	Blastochloris sp.
GCA_012031345.1	JAAUTS000000000	SAMN14376567	SM1_596_0	Blastochloris sp.
GCA_012036375.1	JAAUOI000000000	SAMN14376426	CRU_1_3	Brachymonas sp.
GCA_012032015.1	JAAURY000000000	SAMN14376521	RU_4_23	Brachymonas sp.
GCA_012032975.1	JAAUPU000000000	SAMN14376465	RL_2_11	Caldilineaceae bacterium
GCA_012034595.1	JAAUPE000000000	SAMN14376448	CSU_2_0	Calothrix sp. CSU_2_0
GCA_012031375.1	JAAUTQ000000000	SAMN14376565	SM1_5_4	Calothrix sp. SM1_5_4
GCA_012031285.1	JAAUTW000000000	SAMN14376571	SM1_7_51	Calothrix sp. SM1_7_51
GCA_012031515.1	JAAUTC000000000	SAMN14376551	SM1_2_1	Candidatus Competibacteraceae bacterium
GCA_012032855.1	JAAUQA000000000	SAMN14376471	RL_2_5	Candidatus Competibacteraceae bacterium
GCA_012034115.1	JAAUQP000000000	SAMN14376486	RM1_1_52	Candidatus Gracilibacteria bacterium
GCA_012036295.1	JAAUOJ000000000	SAMN14376427	CRU_1_4	Candidatus Gracilibacteria bacterium
GCA_012031775.1	JAAUTF000000000	SAMN14376554	SM1_231_1	Candidatus Gracilibacteria bacterium
GCA_012031925.1	JAAUSE000000000	SAMN14376527	RU_4_5	Candidatus Gracilibacteria bacterium
GCA_012031035.1	JAAUUT000000000	SAMN14376594	SU_1_2	Candidatus Gracilibacteria bacterium
GCA_012031425.1	JAAUTO000000000	SAMN14376563	SM1_5_30	Candidatus Methylacidiphilales bacterium
GCA_012031725.1	JAAUTR000000000	SAMN14376566	SM1_5_7	Candidatus Methylacidiphilales bacterium
GCA_012034725.1	JAAUOX000000000	SAMN14376441	CSU_1_12	Chamaesiphon sp. CSU_1_12
GCA_012034075.1	JAAURD000000000	SAMN14376500	RM2_2_1	Chloroflexaceae bacterium
GCA_012031525.1	JAAUTH000000000	SAMN14376556	SM1_3_10	Chloroflexaceae bacterium
GCA_012031815.1	JAAUTE000000000	SAMN14376553	SM1_2_4	Chloroflexaceae bacterium
GCA_012031225.1	JAAUTZ000000000	SAMN14376574	SM2_1_1	Chloroflexaceae bacterium
GCA_012031155.1	JAAUUC000000000	SAMN14376577	SM2_1_4	Chloroflexaceae bacterium
GCA_012032475.1	JAAUSY000000000	SAMN14376547	SM1_1_0	Chloroflexaceae bacterium
GCA_012033195.1	JAAUSQ000000000	SAMN14376539	SL_3_2	Chloroflexaceae bacterium
GCA_012033395.1	JAAUQX000000000	SAMN14376494	RM1_31_0	Chloroflexia bacterium
GCA_012033105.1	JAAUPN000000000	SAMN14376458	RL_1_1	Coleofasciculaceae cyanobacterium RL_1_1
GCA_012031635.1	JAAUUE000000000	SAMN14376579	SM2_1_6	Coleofasciculaceae cyanobacterium SM2_1_6
GCA_012030755.1	JAAUUN000000000	SAMN14376588	SM2_3_26	Coleofasciculaceae cyanobacterium SM2_3_26
GCA_012034815.1	JAAUON000000000	SAMN14376431	CRU_2_1	Cyanobacteria bacterium CRU_2_1
GCA_012033495.1	JAAUQT000000000	SAMN14376490	RM1_2_2	Cyanobacteria bacterium RM1_2_2
GCA_012033255.1	JAAUSF000000000	SAMN14376528	RU_5_0	Cyanobacteria bacterium RU_5_0
GCA_012033595.1	JAAUQL000000000	SAMN14376482	RM1_1_3	Cyclobacteriaceae bacterium
GCA_012032715.1	JAAURI000000000	SAMN14376505	RM2_4_2	Cytophagales bacterium
GCA_012031025.1	JAAUUP000000000	SAMN14376590	SM2_4_1	Deltaproteobacteria bacterium
GCA_012031825.1	JAAUTB000000000	SAMN14376550	SM1_1_4	Desulfobacteraceae bacterium
GCA_012031875.1	JAAUSZ000000000	SAMN14376548	SM1_1_2	Desulfobacula sp.
GCA_012032815.1	JAAUQD000000000	SAMN14376474	RL_3_0	Flammeovirgaceae bacterium
GCA_012032075.1	JAAURU000000000	SAMN14376517	RU_4_13	Flavobacterium sp.
GCA_012035105.1	JAAUPB000000000	SAMN14376445	CSU_1_49	Gammaproteobacteria bacterium
GCA_012032615.1	JAAUSM000000000	SAMN14376535	RU_8_47	Gammaproteobacteria bacterium
GCA_012032875.1	JAAUQB000000000	SAMN14376472	RL_2_6	Gammaproteobacteria bacterium
GCA_012032865.1	JAAUPZ000000000	SAMN14376470	RL_2_23	Gammaproteobacteria bacterium
GCA_012034135.1	JAAUOG000000000	SAMN14376424	CRU_1_1	Hydrococcus sp. CRU_1_1
GCA_012034605.1	JAAUPD000000000	SAMN14376447	CSU_1_8	Hydrococcus sp. CSU_1_8
GCA_012033545.1	JAAUQM000000000	SAMN14376483	RM1_1_31	Hydrococcus sp. RM1_1_31
GCA_012032735.1	JAAURN000000000	SAMN14376510	RU_2_2	Hydrococcus sp. RU_2_2
GCA_012031055.1	JAAUUS000000000	SAMN14376593	SU_1_0	Hydrococcus sp. SU_1_0
GCA_012034765.1	JAAUOU000000000	SAMN14376438	CSU_1_1	Hyellaceae cyanobacterium CSU_1_1
GCA_012034015.1	JAAUSL000000000	SAMN14376534	RU_73_0	Hyphomicrobiales bacterium
GCA_012032065.1	JAAURV000000000	SAMN14376518	RU_4_15	Hyphomicrobiales bacterium
GCA_012032655.1	JAAUSK000000000	SAMN14376533	RU_72_0	Hyphomicrobiales bacterium
GCA_012034695.1	JAAUOW000000000	SAMN14376440	CSU_1_11	Hyphomonadaceae bacterium
GCA_012032425.1	JAAUQE000000000	SAMN14376475	RL_3_1	Leptolyngbya sp. RL_3_1
GCA_012034795.1	JAAUOQ000000000	SAMN14376434	CRU_2_3	Leptolyngbyaceae cyanobacterium CRU_2_3
GCA_012034655.1	JAAUOZ000000000	SAMN14376443	CSU_1_3	Leptolyngbyaceae cyanobacterium CSU_1_3
GCA_012034615.1	JAAUPA000000000	SAMN14376444	CSU_1_4	Leptolyngbyaceae cyanobacterium CSU_1_4
GCA_012032345.1	JAAUQI000000000	SAMN14376479	RM1_1_2	Leptolyngbyaceae cyanobacterium RM1_1_2
GCA_012033405.1	JAAUQY000000000	SAMN14376495	RM1_405_57	Leptolyngbyaceae cyanobacterium RM1_405_57
GCA_012033355.1	JAAUQZ000000000	SAMN14376496	RM1_406_9	Leptolyngbyaceae cyanobacterium RM1_406_9
GCA_012032335.1	JAAURF000000000	SAMN14376502	RM2_2_21	Leptolyngbyaceae cyanobacterium RM2_2_21
GCA_012033305.1	JAAURG000000000	SAMN14376503	RM2_2_4	Leptolyngbyaceae cyanobacterium RM2_2_4
GCA_012034055.1	JAAUSG000000000	SAMN14376529	RU_5_1	Leptolyngbyaceae cyanobacterium RU_5_1
GCA_012032635.1	JAAUSN000000000	SAMN14376536	SL_1_1	Leptolyngbyaceae cyanobacterium SL_1_1
GCA_012032515.1	JAAUSS000000000	SAMN14376541	SL_5_14	Leptolyngbyaceae cyanobacterium SL_5_14
GCA_012032565.1	JAAUST000000000	SAMN14376542	SL_5_9	Leptolyngbyaceae cyanobacterium SL_5_9
GCA_012032525.1	JAAUSV000000000	SAMN14376544	SL_7_1	Leptolyngbyaceae cyanobacterium SL_7_1
GCA_012031865.1	JAAUTA000000000	SAMN14376549	SM1_1_3	Leptolyngbyaceae cyanobacterium SM1_1_3
GCA_012031475.1	JAAUTJ000000000	SAMN14376558	SM1_3_5	Leptolyngbyaceae cyanobacterium SM1_3_5
GCA_012031415.1	JAAUTN000000000	SAMN14376562	SM1_4_3	Leptolyngbyaceae cyanobacterium SM1_4_3
GCA_012031115.1	JAAUUK000000000	SAMN14376585	SM2_3_12	Leptolyngbyaceae cyanobacterium SM2_3_12
GCA_012031045.1	JAAUUR000000000	SAMN14376592	SM2_5_2	Leptolyngbyaceae cyanobacterium SM2_5_2
GCA_012030915.1	JAAUUY000000000	SAMN14376599	SU_3_3	Leptolyngbyaceae cyanobacterium SU_3_3
GCA_012033525.1	JAAUQN000000000	SAMN14376484	RM1_1_33	Lewinella sp.
GCA_012032215.1	JAAURO000000000	SAMN14376511	RU_2_4	Limnobacter sp.
GCA_012033055.1	JAAUPR000000000	SAMN14376462	RL_2_0	Limnothrix sp. RL_2_0
GCA_012035135.1	JAAUPI000000000	SAMN14376452	CSU_2_2	Microcoleus sp. CSU_2_2
GCA_012031535.1	JAAUTI000000000	SAMN14376557	SM1_3_4	Microcoleus sp. SM1_3_4
GCA_012030835.1	JAAUVD000000000	SAMN14376604	SU_5_3	Microcoleus sp. SU_5_3
GCA_012030855.1	JAAUVE000000000	SAMN14376605	SU_5_6	Microcoleus sp. SU_5_6
GCA_012031215.1	JAAUUB000000000	SAMN14376576	SM2_1_3	Microscillaceae bacterium
GCA_012031615.1	JAAUUL000000000	SAMN14376586	SM2_3_14	Myxococcales bacterium
GCA_012032685.1	JAAUSD000000000	SAMN14376526	RU_4_48	Myxococcales bacterium
GCA_012030815.1	JAAUVF000000000	SAMN14376607	SL_Arch_1	Nanoarchaeota archaeon
GCA_012030845.1	JAAUVG000000000	SAMN14376608	RL_Arch_2	Nitrosarchaeum sp.
GCA_012030925.1	JAAUVA000000000	SAMN14376601	SU_4_4	Nitrospira sp.
GCA_012032965.1	JAAUPT000000000	SAMN14376464	RL_2_10	Nitrospira sp.
GCA_012033625.1	JAAUPM000000000	SAMN14376457	CSU_7_3	Nitrospiraceae bacterium
GCA_012035445.1	JAAUPG000000000	SAMN14376450	CSU_2_110	Nostocaceae cyanobacterium CSU_2_110
GCA_012033515.1	JAAUQR000000000	SAMN14376488	RM1_1_9	Oscillatoriales cyanobacterium RM1_1_9
GCA_012033335.1	JAAURB000000000	SAMN14376498	RM2_1_1	Oscillatoriales cyanobacterium RM2_1_1
GCA_012032195.1	JAAURP000000000	SAMN14376512	RU_3_3	Oscillatoriales cyanobacterium RU_3_3
GCA_012031195.1	JAAUUG000000000	SAMN14376581	SM2_1_8	Oscillatoriales cyanobacterium SM2_1_8
GCA_012031145.1	JAAUUH000000000	SAMN14376582	SM2_2_1	Oscillatoriales cyanobacterium SM2_2_1
GCA_012030745.1	JAAUUI000000000	SAMN14376583	SM2_3_0	Oscillatoriales cyanobacterium SM2_3_0
GCA_012032775.1	JAAUQO000000000	SAMN14376485	RM1_1_4	Oscillochloris sp.
GCA_012036325.1	JAAUPC000000000	SAMN14376446	CSU_1_7	Paracoccaceae bacterium
GCA_012032365.1	JAAUQG000000000	SAMN14376477	RL_4_12	Paracoccaceae bacterium
GCA_012033015.1	JAAUPS000000000	SAMN14376463	RL_2_1	Phormidesmis sp. RL_2_1
GCA_012031455.1	JAAUTM000000000	SAMN14376561	SM1_4_15	Phycisphaerales bacterium
GCA_012034665.1	JAAUOY000000000	SAMN14376442	CSU_1_23	Phyllobacteriaceae bacterium
GCA_012032415.1	JAAUQF000000000	SAMN14376476	RL_3_22	Planctomycetota bacterium
GCA_012033675.1	JAAUOH000000000	SAMN14376425	CRU_1_2	Pleurocapsa sp. CRU_1_2
GCA_012030945.1	JAAUUV000000000	SAMN14376596	SU_196_0	Pleurocapsa sp. SU_196_0
GCA_012030825.1	JAAUVB000000000	SAMN14376602	SU_5_0	Pleurocapsa sp. SU_5_0
GCA_012033045.1	JAAUPQ000000000	SAMN14376461	RL_1_4	Polaribacter sp.
GCA_012070535.1	JAAUOO000000000	SAMN14376432	CRU_2_10	Pseudanabaena sp. CRU_2_10
GCA_012032055.1	JAAURW000000000	SAMN14376519	RU_4_16	Pseudanabaena sp. RU_4_16
GCA_012030965.1	JAAUUX000000000	SAMN14376598	SU_2_4	Pseudanabaena sp. SU_2_4
GCA_012031365.1	JAAUTP000000000	SAMN14376564	SM1_5_38	Pseudobdellovibrionaceae bacterium
GCA_012031915.1	JAAUSX000000000	SAMN14376546	SL_7_5	Pseudobdellovibrionaceae bacterium
GCA_012032175.1	JAAURQ000000000	SAMN14376513	RU_3_5	Rhodomicrobium sp.
GCA_012032665.1	JAAUSB000000000	SAMN14376524	RU_4_35	Rhodospirillaceae bacterium
GCA_012033505.1	JAAUQS000000000	SAMN14376489	RM1_2_184	Rhodospirillales bacterium
GCA_012033345.1	JAAURA000000000	SAMN14376497	RM1_5_24	Rhodospirillales bacterium
GCA_012034025.1	JAAUSJ000000000	SAMN14376532	RU_7_5	Rhodospirillales bacterium
GCA_012034575.1	JAAUPF000000000	SAMN14376449	CSU_2_1	Richelia sp. CSU_2_1
GCA_012032385.1	JAAUQH000000000	SAMN14376478	RM1_1_1	Richelia sp. RM1_1_1
GCA_012033295.1	JAAURC000000000	SAMN14376499	RM2_1_2	Richelia sp. RM2_1_2
GCA_012033205.1	JAAUSO000000000	SAMN14376537	SL_2_1	Richelia sp. SL_2_1
GCA_012031715.1	JAAUTV000000000	SAMN14376570	SM1_7_0	Richelia sp. SM1_7_0
GCA_012031665.1	JAAUUF000000000	SAMN14376580	SM2_1_7	Richelia sp. SM2_1_7
GCA_012031785.1	JAAUTG000000000	SAMN14376555	SM1_3_1	Saprospiraceae bacterium
GCA_012031245.1	JAAUUA000000000	SAMN14376575	SM2_1_10	Saprospiraceae bacterium
GCA_012032955.1	JAAUPV000000000	SAMN14376466	RL_2_14	Saprospiraceae bacterium
GCA_012032765.1	JAAUQJ000000000	SAMN14376480	RM1_1_20	Saprospiraceae bacterium
GCA_012035165.1	JAAUOR000000000	SAMN14376435	CRU_2_7	Scytonema sp. CRU_2_7
GCA_012031965.1	JAAUSC000000000	SAMN14376525	RU_4_4	Scytonema sp. RU_4_4
GCA_012032285.1	JAAURJ000000000	SAMN14376506	RU_1_1	Sphingomonadales bacterium
GCA_012033235.1	JAAUSI000000000	SAMN14376531	RU_7_36	Sphingomonadales bacterium
GCA_012070705.1	JAAUOS000000000	SAMN14376436	CRU_558_1	Sphingomonadales bacterium
GCA_012035435.1	JAAUPH000000000	SAMN14376451	CSU_2_15	Sphingopyxis sp.
GCA_012034065.1	JAAURE000000000	SAMN14376501	RM2_2_10	Spirulinaceae cyanobacterium RM2_2_10
GCA_012031265.1	JAAUTY000000000	SAMN14376573	SM2_1_0	Spirulinaceae cyanobacterium SM2_1_0
GCA_012033095.1	JAAUPO000000000	SAMN14376459	RL_1_2	Synechococcaceae cyanobacterium RL_1_2
GCA_012033635.1	JAAUQK000000000	SAMN14376481	RM1_1_27	Synechococcaceae cyanobacterium RM1_1_27
GCA_012031845.1	JAAUTD000000000	SAMN14376552	SM1_2_3	Synechococcaceae cyanobacterium SM1_2_3
GCA_012030715.1	JAAUUJ000000000	SAMN14376584	SM2_3_1	Synechococcaceae cyanobacterium SM2_3_1
GCA_012031565.1	JAAUUM000000000	SAMN14376587	SM2_3_2	Synechococcaceae cyanobacterium SM2_3_2
GCA_012031135.1	JAAUUO000000000	SAMN14376589	SM2_3_60	Synechococcaceae cyanobacterium SM2_3_60
GCA_012034805.1	JAAUOP000000000	SAMN14376433	CRU_2_2	Synechococcales cyanobacterium CRU_2_2
GCA_012032745.1	JAAUQQ000000000	SAMN14376487	RM1_1_8	Synechococcales cyanobacterium RM1_1_8
GCA_012032025.1	JAAURX000000000	SAMN14376520	RU_4_20	Synechococcales cyanobacterium RU_4_20
GCA_012032275.1	JAAURK000000000	SAMN14376507	RU_1_2	Tabrizicola sp.
GCA_012031015.1	JAAUUU000000000	SAMN14376595	SU_1_4	Thermales bacterium
GCA_012031435.1	JAAUTL000000000	SAMN14376560	SM1_3_9	Thermoanaerobaculia bacterium
GCA_012032555.1	JAAUSR000000000	SAMN14376540	SL_4_0	Thioploca sp.
GCA_012032315.1	JAAURH000000000	SAMN14376504	RM2_3_1	Verrucomicrobiia bacterium
GCA_012034895.1	JAAUOK000000000	SAMN14376428	CRU_1_5	bacterium
GCA_012034755.1	JAAUOT000000000	SAMN14376437	CRU_558_2	bacterium
GCA_012034715.1	JAAUOV000000000	SAMN14376439	CSU_1_10	bacterium
GCA_012031555.1	JAAUUQ000000000	SAMN14376591	SM2_5_0	bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	34
Data volume, Mbytes	25101

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stromatolite metagenome

Peritidal stromatolite microbial consortia Metagenome

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