subsurface metagenome (ID 269163) - BioProject

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Accession: PRJNA269163 ID: 269163

subsurface metagenome

Microbial community genomics in the subseafloor oceanic basement

Large-volume samples collected from the basaltic crust aquifer reveal novel microbial diversity and a variety of metabolic strategies and physiological attributes in the sediment-covered basaltic crust aquifer.

Accession	PRJNA269163
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	subsurface metagenome[Taxonomy ID: 1564682] unclassified sequences; metagenomes; ecological metagenomes; subsurface metagenome
Publications (total 3) Less...	Nigro OD et al., "Viruses in the Oceanic Basement.", mBio, 2017 Mar 7;8(2) More... Nigro OD et al., "Viruses in the Oceanic Basement.", mBio, 2017 Mar 7;8(2) Jungbluth SP et al., "Metagenome sequencing and 98 microbial genomes from Juan de Fuca Ridge flank subsurface fluids.", Sci Data, 2017 Mar 28;4:170037 Jungbluth SP et al., "Genomic comparisons of a bacterial lineage that inhabits both marine and terrestrial deep subsurface systems.", PeerJ, 2017;5:e3134 Less...
Grants	"Microbial ecology of ocean basement aquifers: ODP borehole observatories" (Grant ID 0604014, National Science Foundation) "Large-scale, long-term, multi-directional, cross-hole experiments in the upper oceanic crust using a borehole observatory network" (Grant ID 0727952, National Science Foundation)
Submission	Registration date: 9-Dec-2016 University of Hawaii
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	15243
WGS master	99
SRA Experiments	4
Publications
PubMed	3
PMC	3
Other datasets
BioSample	101
Assembly	99

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

4
95
99

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_002010375.1	MTNF00000000	SAMN06226361	JdFR-44	Aciduliprofundum sp. JdFR-44
GCA_002011395.1	MTNG00000000	SAMN06226362	JdFR-45	Aciduliprofundum sp. JdFR-45
GCA_002010875.1	MTPD00000000	SAMN06226411	JdFR-94	Acinetobacter sp. JdFR-94
GCA_002010475.1	MTNV00000000	SAMN06226377	JdFR-60	Anaerolineales bacterium JdFR-60
GCA_002011555.1	MTNW00000000	SAMN06226378	JdFR-61	Anaerolineales bacterium JdFR-61
GCA_002010515.1	MTNX00000000	SAMN06226379	JdFR-62	Anaerolineales bacterium JdFR-62
GCA_002011655.1	MTNY00000000	SAMN06226380	JdFR-63	Anaerolineales bacterium JdFR-63
GCA_002010545.1	MTNZ00000000	SAMN06226381	JdFR-64	Anaerolineales bacterium JdFR-64
GCA_002010305.1	MTND00000000	SAMN06226359	JdFR-42	Archaeoglobi archaeon JdFR-42
GCA_002010045.1	MTMJ00000000	SAMN06226339	JdFR-22	Archaeoglobus sp. JdFR-22
GCA_002010125.1	MTMK00000000	SAMN06226340	JdFR-23	Archaeoglobus sp. JdFR-23
GCA_002011215.1	MTML00000000	SAMN06226341	JdFR-24	Archaeoglobus sp. JdFR-24
GCA_002011195.1	MTMM00000000	SAMN06226342	JdFR-25	Archaeoglobus sp. JdFR-25
GCA_002010115.1	MTMN00000000	SAMN06226343	JdFR-26	Archaeoglobus sp. JdFR-26
GCA_002011235.1	MTMO00000000	SAMN06226344	JdFR-27	Archaeoglobus sp. JdFR-27
GCA_002011245.1	MTMP00000000	SAMN06226345	JdFR-28	Archaeoglobus sp. JdFR-28
GCA_002011255.1	MTMQ00000000	SAMN06226346	JdFR-29	Archaeoglobus sp. JdFR-29
GCA_002010165.1	MTMR00000000	SAMN06226347	JdFR-30	Archaeoglobus sp. JdFR-30
GCA_002010155.1	MTMS00000000	SAMN06226348	JdFR-31	Archaeoglobus sp. JdFR-31
GCA_002010195.1	MTMT00000000	SAMN06226349	JdFR-32	Archaeoglobus sp. JdFR-32
GCA_002010205.1	MTMU00000000	SAMN06226350	JdFR-33	Archaeoglobus sp. JdFR-33
GCA_002011295.1	MTMV00000000	SAMN06226351	JdFR-34	Archaeoglobus sp. JdFR-34
GCA_002011315.1	MTMW00000000	SAMN06226352	JdFR-35	Archaeoglobus sp. JdFR-35
GCA_002010225.1	MTMX00000000	SAMN06226353	JdFR-36	Archaeoglobus sp. JdFR-36
GCA_002010215.1	MTMY00000000	SAMN06226354	JdFR-37	Archaeoglobus sp. JdFR-37
GCA_002011335.1	MTMZ00000000	SAMN06226355	JdFR-38	Archaeoglobus sp. JdFR-38
GCA_002010295.1	MTNA00000000	SAMN06226356	JdFR-39	Archaeoglobus sp. JdFR-39
GCA_002010275.1	MTNB00000000	SAMN06226357	JdFR-40	Archaeoglobus sp. JdFR-40
GCA_002010285.1	MTNC00000000	SAMN06226358	JdFR-41	Archaeoglobus sp. JdFR-41
GCA_002011365.1	MTNH00000000	SAMN06226363	JdFR-46	Candidatus Acetothermia bacterium JdFR-46
GCA_002011415.1	MTNI00000000	SAMN06226364	JdFR-47	Candidatus Acetothermia bacterium JdFR-47
GCA_002011425.1	MTNJ00000000	SAMN06226365	JdFR-48	Candidatus Acetothermia bacterium JdFR-48
GCA_002010355.1	MTNK00000000	SAMN06226366	JdFR-49	Candidatus Acetothermia bacterium JdFR-49
GCA_002010365.1	MTNL00000000	SAMN06226367	JdFR-50	Candidatus Acetothermia bacterium JdFR-50
GCA_002011435.1	MTNM00000000	SAMN06226368	JdFR-51	Candidatus Acetothermia bacterium JdFR-51
GCA_002010385.1	MTNN00000000	SAMN06226369	JdFR-52	Candidatus Acetothermia bacterium JdFR-52
GCA_002010685.1	MTOM00000000	SAMN06226394	JdFR-77	Candidatus Aminicenantes bacterium JdFR-77
GCA_002010665.1	MTON00000000	SAMN06226395	JdFR-78	Candidatus Aminicenantes bacterium JdFR-78
GCA_002010715.1	MTOO00000000	SAMN06226396	JdFR-79	Candidatus Aminicenantes bacterium JdFR-79
GCA_002010725.1	MTOP00000000	SAMN06226397	JdFR-80	Candidatus Aminicenantes bacterium JdFR-80
GCA_002010885.1	MTLO00000000	SAMN06226318	JdFR-01	Candidatus Bathyarchaeota archaeon JdFR-01
GCA_002010925.1	MTLR00000000	SAMN06226321	JdFR-04	Candidatus Bathyarchaeota archaeon JdFR-04
GCA_002009955.1	MTLS00000000	SAMN06226322	JdFR-05	Candidatus Bathyarchaeota archaeon JdFR-05
GCA_002010955.1	MTLT00000000	SAMN06226323	JdFR-06	Candidatus Bathyarchaeota archaeon JdFR-06
GCA_002010975.1	MTLU00000000	SAMN06226324	JdFR-07	Candidatus Bathyarchaeota archaeon JdFR-07
GCA_002010995.1	MTLV00000000	SAMN06226325	JdFR-08	Candidatus Bathyarchaeota archaeon JdFR-08
GCA_002011005.1	MTLW00000000	SAMN06226326	JdFR-09	Candidatus Bathyarchaeota archaeon JdFR-09
GCA_001899445.1	MPOA00000000	SAMN06016028	modA32	Candidatus Desulfopertinax cowenii
GCA_002011085.2	MTMB00000000	SAMN06226331	JdFR-14	Candidatus Geothermarchaeum rappei
GCA_002009985.2	MTLX00000000	SAMN06226327	JdFR-10	Candidatus Hecatella orcuttiae
GCA_002011035.2	MTLY00000000	SAMN06226328	JdFR-11	Candidatus Hecatella orcuttiae
GCA_002010635.1	MTOG00000000	SAMN06226388	JdFR-71	Candidatus Hydrothermae bacterium JdFR-71
GCA_002011675.1	MTOI00000000	SAMN06226390	JdFR-73	Candidatus Hydrothermae bacterium JdFR-73
GCA_002010655.1	MTOJ00000000	SAMN06226391	JdFR-74	Candidatus Hydrothermae bacterium JdFR-74
GCA_002011635.1	MTOK00000000	SAMN06226392	JdFR-75	Candidatus Hydrothermae bacterium JdFR-75
GCA_002011125.2	MTMF00000000	SAMN06226335	JdFR-18	Candidatus Hydrothermarchaeum profundi
GCA_002011615.1	MTOH00000000	SAMN06226389	JdFR-72	Candidatus Hydrothermus pacificus
GCA_002011155.2	MTMH00000000	SAMN06226337	JdFR-20	Candidatus Mnemosynella biddleae
GCA_002011165.2	MTMI00000000	SAMN06226338	JdFR-21	Candidatus Mnemosynella biddleae
GCA_002010065.2	MTMD00000000	SAMN06226333	JdFR-16	Candidatus Pyrohabitans jungbluthii
GCA_002011115.2	MTME00000000	SAMN06226334	JdFR-17	Candidatus Pyrohabitans sp. JdFR-17
GCA_002011075.2	MTMA00000000	SAMN06226330	JdFR-13	Candidatus Scotarchaeum otlingeri
GCA_002010795.1	MTOY00000000	SAMN06226406	JdFR-89	Caulobacteraceae bacterium JdFR-89
GCA_002011535.1	MTNU00000000	SAMN06226376	JdFR-59	Chloroflexi bacterium JdFR-59
GCA_002011055.1	MTLZ00000000	SAMN06226329	JdFR-12	Crenarchaeota archaeon JdFR-12
GCA_002010805.1	MTOZ00000000	SAMN06226407	JdFR-90	Cupriavidus sp. JdFR-90
GCA_002011685.1	MTOL00000000	SAMN06226393	JdFR-76	Deferribacteres bacterium JdFR-76
GCA_002011475.1	MTNP00000000	SAMN06226371	JdFR-54	Dehalococcoides sp. JdFR-54
GCA_002011485.1	MTNQ00000000	SAMN06226372	JdFR-55	Dehalococcoides sp. JdFR-55
GCA_002011495.1	MTNR00000000	SAMN06226373	JdFR-56	Dehalococcoides sp. JdFR-56
GCA_002010445.1	MTNS00000000	SAMN06226374	JdFR-57	Dehalococcoides sp. JdFR-57
GCA_002010455.1	MTNT00000000	SAMN06226375	JdFR-58	Dehalococcoides sp. JdFR-58
GCA_002011835.1	MTPE00000000	SAMN06226412	JdFR-95	Desulfarculaceae bacterium JdFR-95
GCA_002011845.1	MTPF00000000	SAMN06226413	JdFR-96	Desulfarculaceae bacterium JdFR-96
GCA_002010915.1	MTPG00000000	SAMN06226414	JdFR-97	Desulfarculaceae bacterium JdFR-97
GCA_002011895.1	MTPH00000000	SAMN06226415	JdFR-98	Desulfarculaceae bacterium JdFR-98
GCA_002010075.1	MTMG00000000	SAMN06226336	JdFR-19	Methanomicrobia archaeon JdFR-19
GCA_002010035.1	MTMC00000000	SAMN06226332	JdFR-15	Methanopyri archaeon JdFR-15
GCA_002009965.1	MTLQ00000000	SAMN06226320	JdFR-03	Methanothermococcus sp. JdFR-03
GCA_002011735.1	MTOQ00000000	SAMN06226398	JdFR-81	Nitrospirae bacterium JdFR-81
GCA_002011775.1	MTOR00000000	SAMN06226399	JdFR-82	Nitrospirae bacterium JdFR-82
GCA_002011715.1	MTOS00000000	SAMN06226400	JdFR-83	Nitrospirae bacterium JdFR-83
GCA_002010775.1	MTOT00000000	SAMN06226401	JdFR-84	Nitrospirae bacterium JdFR-84
GCA_002011745.1	MTOU00000000	SAMN06226402	JdFR-85	Nitrospirae bacterium JdFR-85
GCA_002011815.1	MTOV00000000	SAMN06226403	JdFR-86	Nitrospirae bacterium JdFR-86
GCA_002010755.1	MTOW00000000	SAMN06226404	JdFR-87	Nitrospirae bacterium JdFR-87
GCA_002011795.1	MTOX00000000	SAMN06226405	JdFR-88	Nitrospirae bacterium JdFR-88
GCA_002010595.1	MTOE00000000	SAMN06226386	JdFR-69	Peptococcaceae bacterium JdFR-69
GCA_002010815.1	MTPA00000000	SAMN06226408	JdFR-91	Pseudomonas sp. JdFR-91
GCA_002010845.1	MTPB00000000	SAMN06226409	JdFR-92	Pseudomonas sp. JdFR-92
GCA_002011825.1	MTPC00000000	SAMN06226410	JdFR-93	Pseudomonas sp. JdFR-93
GCA_002010535.1	MTOD00000000	SAMN06226385	JdFR-68	Thermoanaerobacterales bacterium JdFR-68
GCA_002009975.1	MTLP00000000	SAMN06226319	JdFR-02	Thermococcus sp. JdFR-02
GCA_002011355.1	MTNE00000000	SAMN06226360	JdFR-43	Thermoplasmatales archaeon JdFR-43
GCA_002010435.1	MTNO00000000	SAMN06226370	JdFR-53	bacterium JdFR-53
GCA_002011565.1	MTOA00000000	SAMN06226382	JdFR-65	bacterium JdFR-65
GCA_002011575.1	MTOB00000000	SAMN06226383	JdFR-66	bacterium JdFR-66
GCA_002010555.1	MTOC00000000	SAMN06226384	JdFR-67	bacterium JdFR-67
GCA_002010615.1	MTOF00000000	SAMN06226387	JdFR-70	bacterium JdFR-70

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subsurface metagenome

Microbial community genomics in the subseafloor oceanic basement

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