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Accession: PRJNA946783 ID: 946783

Context dependent function of transcriptional regulator Rap1 in gene silencing and activation [ChIP-seq III] (brewer's yeast)

See Genome Information for Saccharomyces cerevisiae
As part of a study on the mechanism of Sir-based silencing at HML in S.cerevisiae, and the contribution of Rap1 to transcription of the locus, we performed ChIP-seq of multiple components of RNA Pol II machinery in different genetic backgrounds including: sir4∆, SIR+, and with or without a mutation that abbrogated Rap1 binding at the alpha promoter. More...
AccessionPRJNA946783; GEO: GSE227760
Data TypeEpigenomics
ScopeMultiisolate
OrganismSaccharomyces cerevisiae[Taxonomy ID: 4932]
Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces; Saccharomyces cerevisiae
Publications
  • Bondra ER et al., "Context-dependent function of the transcriptional regulator Rap1 in gene silencing and activation in Saccharomyces cerevisiae.", Proc Natl Acad Sci U S A, 2023 Oct 3;120(40):e2304343120
  • Bondra ER et al., "Context dependent function of the transcriptional regulator Rap1 in gene silencing and activation in Saccharomyces cerevisiae.", bioRxiv, 2023 May 11;
SubmissionRegistration date: 20-Mar-2023
Rine, Molecular and Cell Biology, University of California, Berkeley
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments76
Publications
PubMed2
PMC2
Other datasets
BioSample76
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes4999
SRA Data Details
ParameterValue
Data volume, Gbases172
Data volume, Mbytes64834

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