This SuperSeries is composed of the SubSeries listed below.
Overall design: Refer to individual Series
| Accession | PRJNA895421; GEO: GSE216800 |
| Type | Umbrella project |
| Publications | Zhou P et al., "Single-cell CRISPR screens in vivo map T cell fate regulomes in cancer.", Nature, 2023 Dec;624(7990):154-163 |
| Submission | Registration date: 28-Oct-2022
Immunology, St Jude Children's Research Hospital |
| Relevance | Superseries |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 74 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 74 |
| GEO DataSets | 9 |
GEO Data Details| Parameter | Value |
|---|
| Data volume, Spots | 432690 |
| Data volume, Processed Mbytes | 12 |
| Data volume, Supplementary Mbytes | 2074 |
| Parameter | Value |
|---|
| Data volume, Gbases | 2,308 |
| Data volume, Tbytes | 0.74 |
Single-cell CRISPR screens in vivo map T cell fate regulomes in cancer encompasses the following 8 sub-projects:
| Project Type | Number of Projects |
| Epigenomics | 3 |
BioProject
accession | Organism | Title |
|---|
| PRJNA895423 | Mus musculus | Single-cell CRISPR screens in vivo map T cell fate regulomes in cancer [Rbpj_ATAC-seq] (Immunology, St Jude Children's...) | | PRJNA1000987 | Mus musculus | Single-cell CRISPR screens in vivo map T cell fate regulomes in cancer [Ikzf1 ATAC-Seq] (Immunology, St Jude Children's...) | | PRJNA1000988 | Mus musculus | Single-cell CRISPR screens in vivo map T cell fate regulomes in cancer [Ets1 ATAC-Seq] (Immunology, St Jude Children's...) |
|
| Transcriptome or Gene expression | 5 |
BioProject
accession | Organism | Title |
|---|
| PRJNA895422 | Mus musculus | Single-cell CRISPR screens in vivo map T cell fate regulomes in cancer [Ikzf1_scRNAseq] (Immunology, St Jude Children's...) | | PRJNA895425 | Mus musculus | Single-cell CRISPR screens in vivo map T cell fate regulomes in cancer [Rbpj_scRNAseq] (Immunology, St Jude Children's...) | | PRJNA895088 | Mus musculus | Single-cell CRISPR screens in vivo map T cell fate regulomes in cancer [microarray] (Immunology, St Jude Children's...) | | PRJNA896168 | Mus musculus | Single-cell CRISPR screens in vivo map T cell fate regulomes in cancer [scCRISPR] (Immunology, St Jude Children's...) | | PRJNA903380 | Mus musculus | Single-cell CRISPR screens in vivo map T cell fate regulomes in cancer [Ets1 scRNAseq] (Immunology, St Jude Children's...) |
|