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Accession: PRJNA892074 ID: 892074

Targeting MYC effector functions in pancreatic cancer by inhibiting the ATPase RUVBL1/2

Objective: The hallmark oncogene MYC drives the progression of most tumorstumours, but direct inhibition of MYC by a small-molecule drug has not reached clinical testing. MYC is a transcription factor that depends on several binding partners to function. We therefore explored the possibility of targeting MYC via its interactome in pancreatic ductal adenocarcinoma (PDAC). Design: To identify the most suitable targets among all MYC binding partners, we constructed a targeted shRNA library and performed screens in cultured PDAC cells and tumorstumours in mice.Results:Unexpectedly, many MYC binding partners were found to be important for cultured PDAC cells but dispensable in vivo. However, some were also essential for tumorstumours in their natural environment and, among these, the ATPases RUVBL1 and RUVBL2 ranked first. More...
AccessionPRJNA892074; GEO: GSE216095
TypeUmbrella project
SubmissionRegistration date: 19-Oct-2022
Cancer Systems Biology Lab, Department of Molecular Biology and Biochemistry, Biocenter of the University of Würzburg
RelevanceSuperseries
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments87
Other datasets
BioSample87
GEO DataSets5
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes1753
SRA Data Details
ParameterValue
Data volume, Gbases113
Data volume, Mbytes37952
Targeting MYC effector functions in pancreatic cancer by inhibiting the ATPase RUVBL1/2 encompasses the following 4 sub-projects:
Project TypeNumber of Projects
Epigenomics1
BioProject
accession
OrganismTitle
PRJNA892081Mus musculusTargeting MYC effector functions in pancreatic cancer by inhibiting the ATPase RUVBL1/2 (ChIP-Seq) (Cancer Systems Biology Lab,...)
Other2
BioProject
accession
NameTitle
PRJNA892079Mus musculusTargeting MYC effector functions in pancreatic cancer by inhibiting the ATPase RUVBL1/2 (SLAM-Seq) (Cancer Systems Biology Lab,...)
PRJNA892078Targeting MYC effector functions in pancreatic cancer by inhibiting the ATPase RUVBL1/2 (Screen)Targeting MYC effector functions in pancreatic cancer by inhibiting the ATPase RUVBL1/2 (Screen) (Cancer Systems Biology Lab,...)
Transcriptome or Gene expression1
BioProject
accession
OrganismTitle
PRJNA1101849Mus musculusTargeting MYC effector functions in pancreatic cancer by inhibiting the ATPase RUVBL1/2 (RNA-seq) (Cancer Systems Biology Lab,...)

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