Escherichia coli (ID 824420) - BioProject

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Accession: PRJNA824420 ID: 824420

Escherichia coli

Escherichia coli Genome sequencing and assembly

See Genome Information for Escherichia coli

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In-depth analysis of the plasmidome of ESBL E. coli isolates from a single hospital setting.

Accession	PRJNA824420
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Publications	Mahmud B et al., "Epidemiology of Plasmid Lineages Mediating the Spread of Extended-Spectrum Beta-Lactamases among Clinical Escherichia coli.", mSystems, 2022 Oct 26;7(5):e0051922
Submission	Registration date: 30-Aug-2022 Washington University School of Medicine

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	149
SRA Experiments	298
Publications
PubMed	1
PMC	1
Other datasets
BioSample	149
Assembly	149

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

149
149

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_024764875.1	JAMJIY000000000	SAMN27404460	GD03034_ECOL_HY_152	Escherichia coli
GCA_024764015.1	JAMJJY000000000	SAMN27404434	GD03008_ECOL_HY_126	Escherichia coli
GCA_024763995.1	JAMJJV000000000	SAMN27404437	GD03011_ECOL_HY_129	Escherichia coli
GCA_024768975.1	JAMJOQ000000000	SAMN27404312	GD02886_ECOL_HY_1	Escherichia coli
GCA_024768965.1	JAMJOP000000000	SAMN27404313	GD02887_ECOL_HY_2	Escherichia coli
GCA_024768955.1	JAMJOO000000000	SAMN27404314	GD02888_ECOL_HY_3	Escherichia coli
GCA_024768915.1	JAMJON000000000	SAMN27404315	GD02889_ECOL_HY_4	Escherichia coli
GCA_024768835.1	JAMJOM000000000	SAMN27404316	GD02890_ECOL_HY_5	Escherichia coli
GCA_024768775.1	JAMJOL000000000	SAMN27404317	GD02891_ECOL_HY_6	Escherichia coli
GCA_024768745.1	JAMJOK000000000	SAMN27404318	GD02892_ECOL_HY_7	Escherichia coli
GCA_024768765.1	JAMJOG000000000	SAMN27404322	GD02896_ECOL_HY_11	Escherichia coli
GCA_024768735.1	JAMJOJ000000000	SAMN27404319	GD02893_ECOL_HY_8	Escherichia coli
GCA_024768715.1	JAMJOH000000000	SAMN27404321	GD02895_ECOL_HY_10	Escherichia coli
GCA_024768695.1	JAMJOI000000000	SAMN27404320	GD02894_ECOL_HY_9	Escherichia coli
GCA_024768675.1	JAMJOF000000000	SAMN27404323	GD02897_ECOL_HY_12	Escherichia coli
GCA_024768655.1	JAMJOE000000000	SAMN27404324	GD02898_ECOL_HY_13	Escherichia coli
GCA_024768625.1	JAMJNX000000000	SAMN27404331	GD02905_ECOL_HY_20	Escherichia coli
GCA_024768615.1	JAMJOD000000000	SAMN27404325	GD02899_ECOL_HY_14	Escherichia coli
GCA_024768595.1	JAMJOC000000000	SAMN27404326	GD02900_ECOL_HY_15	Escherichia coli
GCA_024768575.1	JAMJOB000000000	SAMN27404327	GD02901_ECOL_HY_16	Escherichia coli
GCA_024768555.1	JAMJOA000000000	SAMN27404328	GD02902_ECOL_HY_17	Escherichia coli
GCA_024768535.1	JAMJNZ000000000	SAMN27404329	GD02903_ECOL_HY_18	Escherichia coli
GCA_024768515.1	JAMJNY000000000	SAMN27404330	GD02904_ECOL_HY_19	Escherichia coli
GCA_024768495.1	JAMJNV000000000	SAMN27404333	GD02907_ECOL_HY_22	Escherichia coli
GCA_024768475.1	JAMJNW000000000	SAMN27404332	GD02906_ECOL_HY_21	Escherichia coli
GCA_024768455.1	JAMJNU000000000	SAMN27404334	GD02908_ECOL_HY_23	Escherichia coli
GCA_024768425.1	JAMJNS000000000	SAMN27404336	GD02910_ECOL_HY_25	Escherichia coli
GCA_024768415.1	JAMJNT000000000	SAMN27404335	GD02909_ECOL_HY_24	Escherichia coli
GCA_024768395.1	JAMJNR000000000	SAMN27404337	GD02911_ECOL_HY_26	Escherichia coli
GCA_024768375.1	JAMJNQ000000000	SAMN27404338	GD02912_ECOL_HY_27	Escherichia coli
GCA_024768355.1	JAMJNP000000000	SAMN27404339	GD02913_ECOL_HY_28	Escherichia coli
GCA_024768325.1	JAMJNO000000000	SAMN27404340	GD02914_ECOL_HY_29	Escherichia coli
GCA_024768315.1	JAMJNM000000000	SAMN27404342	GD02916_ECOL_HY_31	Escherichia coli
GCA_024768295.1	JAMJNN000000000	SAMN27404341	GD02915_ECOL_HY_30	Escherichia coli
GCA_024768275.1	JAMJNL000000000	SAMN27404343	GD02917_ECOL_HY_32	Escherichia coli
GCA_024768255.1	JAMJNJ000000000	SAMN27404345	GD02919_ECOL_HY_34	Escherichia coli
GCA_024768215.1	JAMJNH000000000	SAMN27404347	GD02921_ECOL_HY_36	Escherichia coli
GCA_024768235.1	JAMJNK000000000	SAMN27404344	GD02918_ECOL_HY_33	Escherichia coli
GCA_024768195.1	JAMJNI000000000	SAMN27404346	GD02920_ECOL_HY_35	Escherichia coli
GCA_024768175.1	JAMJNG000000000	SAMN27404348	GD02922_ECOL_HY_38	Escherichia coli
GCA_024768155.1	JAMJND000000000	SAMN27404351	GD02925_ECOL_HY_41	Escherichia coli
GCA_024768135.1	JAMJNF000000000	SAMN27404349	GD02923_ECOL_HY_39	Escherichia coli
GCA_024768115.1	JAMJNE000000000	SAMN27404350	GD02924_ECOL_HY_40	Escherichia coli
GCA_024768095.1	JAMJNC000000000	SAMN27404352	GD02926_ECOL_HY_42	Escherichia coli
GCA_024768075.1	JAMJNA000000000	SAMN27404354	GD02928_ECOL_HY_44	Escherichia coli
GCA_024768055.1	JAMJMZ000000000	SAMN27404355	GD02929_ECOL_HY_45	Escherichia coli
GCA_024768025.1	JAMJNB000000000	SAMN27404353	GD02927_ECOL_HY_43	Escherichia coli
GCA_024768015.1	JAMJMY000000000	SAMN27404356	GD02930_ECOL_HY_46	Escherichia coli
GCA_024767995.1	JAMJMX000000000	SAMN27404357	GD02931_ECOL_HY_48	Escherichia coli
GCA_024767925.1	JAMJMW000000000	SAMN27404358	GD02932_ECOL_HY_49	Escherichia coli
GCA_024767935.1	JAMJMP000000000	SAMN27404365	GD02939_ECOL_HY_56	Escherichia coli
GCA_024767945.1	JAMJMS000000000	SAMN27404362	GD02936_ECOL_HY_53	Escherichia coli
GCA_024767915.1	JAMJMV000000000	SAMN27404359	GD02933_ECOL_HY_50	Escherichia coli
GCA_024767895.1	JAMJMU000000000	SAMN27404360	GD02934_ECOL_HY_51	Escherichia coli
GCA_024767855.1	JAMJMR000000000	SAMN27404363	GD02937_ECOL_HY_54	Escherichia coli
GCA_024767875.1	JAMJMT000000000	SAMN27404361	GD02935_ECOL_HY_52	Escherichia coli
GCA_024767835.1	JAMJMQ000000000	SAMN27404364	GD02938_ECOL_HY_55	Escherichia coli
GCA_024767815.1	JAMJMO000000000	SAMN27404366	GD02940_ECOL_HY_57	Escherichia coli
GCA_024767795.1	JAMJMN000000000	SAMN27404367	GD02941_ECOL_HY_58	Escherichia coli
GCA_024767765.1	JAMJMM000000000	SAMN27404368	GD02942_ECOL_HY_59	Escherichia coli
GCA_024767755.1	JAMJML000000000	SAMN27404369	GD02943_ECOL_HY_60	Escherichia coli
GCA_024767725.1	JAMJMK000000000	SAMN27404370	GD02944_ECOL_HY_61	Escherichia coli
GCA_024767715.1	JAMJMG000000000	SAMN27404374	GD02948_ECOL_HY_65	Escherichia coli
GCA_024767675.1	JAMJMJ000000000	SAMN27404371	GD02945_ECOL_HY_62	Escherichia coli
GCA_024767635.1	JAMJMI000000000	SAMN27404372	GD02946_ECOL_HY_63	Escherichia coli
GCA_024767595.1	JAMJMH000000000	SAMN27404373	GD02947_ECOL_HY_64	Escherichia coli
GCA_024767605.1	JAMJMC000000000	SAMN27404378	GD02952_ECOL_HY_69	Escherichia coli
GCA_024767515.1	JAMJME000000000	SAMN27404376	GD02950_ECOL_HY_67	Escherichia coli
GCA_024767495.1	JAMJMF000000000	SAMN27404375	GD02949_ECOL_HY_66	Escherichia coli
GCA_024767455.1	JAMJMD000000000	SAMN27404377	GD02951_ECOL_HY_68	Escherichia coli
GCA_024767365.1	JAMJMB000000000	SAMN27404379	GD02953_ECOL_HY_70	Escherichia coli
GCA_024767325.1	JAMJLX000000000	SAMN27404383	GD02957_ECOL_HY_74	Escherichia coli
GCA_024767315.1	JAMJMA000000000	SAMN27404380	GD02954_ECOL_HY_71	Escherichia coli
GCA_024767295.1	JAMJLZ000000000	SAMN27404381	GD02955_ECOL_HY_72	Escherichia coli
GCA_024767235.1	JAMJLY000000000	SAMN27404382	GD02956_ECOL_HY_73	Escherichia coli
GCA_024767185.1	JAMJLT000000000	SAMN27404387	GD02961_ECOL_HY_78	Escherichia coli
GCA_024767165.1	JAMJLU000000000	SAMN27404386	GD02960_ECOL_HY_77	Escherichia coli
GCA_024767155.1	JAMJLW000000000	SAMN27404384	GD02958_ECOL_HY_75	Escherichia coli
GCA_024767095.1	JAMJLV000000000	SAMN27404385	GD02959_ECOL_HY_76	Escherichia coli
GCA_024766995.1	JAMJLP000000000	SAMN27404391	GD02965_ECOL_HY_82	Escherichia coli
GCA_024767005.1	JAMJLQ000000000	SAMN27404390	GD02964_ECOL_HY_81	Escherichia coli
GCA_024766935.1	JAMJLS000000000	SAMN27404388	GD02962_ECOL_HY_79	Escherichia coli
GCA_024766875.1	JAMJLO000000000	SAMN27404392	GD02966_ECOL_HY_83	Escherichia coli
GCA_024766835.1	JAMJLN000000000	SAMN27404393	GD02967_ECOL_HY_84	Escherichia coli
GCA_024766795.1	JAMJLR000000000	SAMN27404389	GD02963_ECOL_HY_80	Escherichia coli
GCA_024766655.1	JAMJLH000000000	SAMN27404399	GD02973_ECOL_HY_90	Escherichia coli
GCA_024766615.1	JAMJLL000000000	SAMN27404395	GD02969_ECOL_HY_86	Escherichia coli
GCA_024766645.1	JAMJLM000000000	SAMN27404394	GD02968_ECOL_HY_85	Escherichia coli
GCA_024766625.1	JAMJLI000000000	SAMN27404398	GD02972_ECOL_HY_89	Escherichia coli
GCA_024766595.1	JAMJLJ000000000	SAMN27404397	GD02971_ECOL_HY_88	Escherichia coli
GCA_024766565.1	JAMJLK000000000	SAMN27404396	GD02970_ECOL_HY_87	Escherichia coli
GCA_024766555.1	JAMJLD000000000	SAMN27404403	GD02977_ECOL_HY_94	Escherichia coli
GCA_024766525.1	JAMJLG000000000	SAMN27404400	GD02974_ECOL_HY_91	Escherichia coli
GCA_024766515.1	JAMJLF000000000	SAMN27404401	GD02975_ECOL_HY_92	Escherichia coli
GCA_024766495.1	JAMJLE000000000	SAMN27404402	GD02976_ECOL_HY_93	Escherichia coli
GCA_024766475.1	JAMJLA000000000	SAMN27404406	GD02980_ECOL_HY_98	Escherichia coli
GCA_024766425.1	JAMJKZ000000000	SAMN27404407	GD02981_ECOL_HY_99	Escherichia coli
GCA_024766445.1	JAMJLC000000000	SAMN27404404	GD02978_ECOL_HY_96	Escherichia coli
GCA_024766415.1	JAMJKX000000000	SAMN27404409	GD02983_ECOL_HY_101	Escherichia coli
GCA_024766395.1	JAMJLB000000000	SAMN27404405	GD02979_ECOL_HY_97	Escherichia coli
GCA_024766375.1	JAMJKW000000000	SAMN27404410	GD02984_ECOL_HY_102	Escherichia coli
GCA_024766355.1	JAMJKT000000000	SAMN27404413	GD02987_ECOL_HY_105	Escherichia coli
GCA_024766335.1	JAMJKY000000000	SAMN27404408	GD02982_ECOL_HY_100	Escherichia coli
GCA_024766295.1	JAMJKU000000000	SAMN27404412	GD02986_ECOL_HY_104	Escherichia coli
GCA_024766305.1	JAMJKP000000000	SAMN27404417	GD02991_ECOL_HY_109	Escherichia coli
GCA_024766275.1	JAMJKV000000000	SAMN27404411	GD02985_ECOL_HY_103	Escherichia coli
GCA_024766255.1	JAMJKQ000000000	SAMN27404416	GD02990_ECOL_HY_108	Escherichia coli
GCA_024766235.1	JAMJKS000000000	SAMN27404414	GD02988_ECOL_HY_106	Escherichia coli
GCA_024766215.1	JAMJKR000000000	SAMN27404415	GD02989_ECOL_HY_107	Escherichia coli
GCA_024766195.1	JAMJKN000000000	SAMN27404419	GD02993_ECOL_HY_111	Escherichia coli
GCA_024766175.1	JAMJKO000000000	SAMN27404418	GD02992_ECOL_HY_110	Escherichia coli
GCA_024766155.1	JAMJKL000000000	SAMN27404421	GD02995_ECOL_HY_113	Escherichia coli
GCA_024766135.1	JAMJKM000000000	SAMN27404420	GD02994_ECOL_HY_112	Escherichia coli
GCA_024766115.1	JAMJKH000000000	SAMN27404425	GD02999_ECOL_HY_117	Escherichia coli
GCA_024766095.1	JAMJKJ000000000	SAMN27404423	GD02997_ECOL_HY_115	Escherichia coli
GCA_024766055.1	JAMJKK000000000	SAMN27404422	GD02996_ECOL_HY_114	Escherichia coli
GCA_024766065.1	JAMJKD000000000	SAMN27404429	GD03003_ECOL_HY_121	Escherichia coli
GCA_024766035.1	JAMJKI000000000	SAMN27404424	GD02998_ECOL_HY_116	Escherichia coli
GCA_024766015.1	JAMJKG000000000	SAMN27404426	GD03000_ECOL_HY_118	Escherichia coli
GCA_024765995.1	JAMJKF000000000	SAMN27404427	GD03001_ECOL_HY_119	Escherichia coli
GCA_024765975.1	JAMJKE000000000	SAMN27404428	GD03002_ECOL_HY_120	Escherichia coli
GCA_024765955.1	JAMJKB000000000	SAMN27404431	GD03005_ECOL_HY_123	Escherichia coli
GCA_024765935.1	JAMJKC000000000	SAMN27404430	GD03004_ECOL_HY_122	Escherichia coli
GCA_024765895.1	JAMJJZ000000000	SAMN27404433	GD03007_ECOL_HY_125	Escherichia coli
GCA_024765905.1	JAMJKA000000000	SAMN27404432	GD03006_ECOL_HY_124	Escherichia coli
GCA_024765855.1	JAMJJQ000000000	SAMN27404442	GD03016_ECOL_HY_134	Escherichia coli
GCA_024765865.1	JAMJJX000000000	SAMN27404435	GD03009_ECOL_HY_127	Escherichia coli
GCA_024765835.1	JAMJJW000000000	SAMN27404436	GD03010_ECOL_HY_128	Escherichia coli
GCA_024765795.1	JAMJJU000000000	SAMN27404438	GD03012_ECOL_HY_130	Escherichia coli
GCA_024765805.1	JAMJJT000000000	SAMN27404439	GD03013_ECOL_HY_131	Escherichia coli
GCA_024765775.1	JAMJJS000000000	SAMN27404440	GD03014_ECOL_HY_132	Escherichia coli
GCA_024765735.1	JAMJJP000000000	SAMN27404443	GD03017_ECOL_HY_135	Escherichia coli
GCA_024765675.1	JAMJJR000000000	SAMN27404441	GD03015_ECOL_HY_133	Escherichia coli
GCA_024765655.1	JAMJJO000000000	SAMN27404444	GD03018_ECOL_HY_136	Escherichia coli
GCA_024765615.1	JAMJJN000000000	SAMN27404445	GD03019_ECOL_HY_137	Escherichia coli
GCA_024765535.1	JAMJJM000000000	SAMN27404446	GD03020_ECOL_HY_138	Escherichia coli
GCA_024765485.1	JAMJJH000000000	SAMN27404451	GD03025_ECOL_HY_143	Escherichia coli
GCA_024765465.1	JAMJJK000000000	SAMN27404448	GD03022_ECOL_HY_140	Escherichia coli
GCA_024765455.1	JAMJJL000000000	SAMN27404447	GD03021_ECOL_HY_139	Escherichia coli
GCA_024765435.1	JAMJJJ000000000	SAMN27404449	GD03023_ECOL_HY_141	Escherichia coli
GCA_024765395.1	JAMJJE000000000	SAMN27404454	GD03028_ECOL_HY_146	Escherichia coli
GCA_024765335.1	JAMJJF000000000	SAMN27404453	GD03027_ECOL_HY_145	Escherichia coli
GCA_024765305.1	JAMJJG000000000	SAMN27404452	GD03026_ECOL_HY_144	Escherichia coli
GCA_024765295.1	JAMJJI000000000	SAMN27404450	GD03024_ECOL_HY_142	Escherichia coli
GCA_024765175.1	JAMJIZ000000000	SAMN27404459	GD03033_ECOL_HY_151	Escherichia coli
GCA_024765185.1	JAMJJD000000000	SAMN27404455	GD03029_ECOL_HY_147	Escherichia coli
GCA_024765155.1	JAMJJB000000000	SAMN27404457	GD03031_ECOL_HY_149	Escherichia coli
GCA_024765115.1	JAMJJC000000000	SAMN27404456	GD03030_ECOL_HY_148	Escherichia coli
GCA_024765025.1	JAMJJA000000000	SAMN27404458	GD03032_ECOL_HY_150	Escherichia coli

SRA Data Details

Parameter	Value
Data volume, Gbases	162
Data volume, Mbytes	93853

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Escherichia coli Genome sequencing and assembly

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