See
Genome Information for Carassius gibelio
Polyploidy defines eukaryotic cells with more than two sets of homologous chromosomes. Polyploid animal genome assemblies have restricted homologous chromosome copies to a "mosaic" ("collapsed") representation. Using cutting-edge long-read sequencing and 3D-technologies, we deciphered the genome of an invasive Eurasian teleost fish species, the asexual Prussian carp, and present the first haplotype-resolved chromosome-scale assembly of a hexaploid animal in unprecedented contiguity and completeness. Assembly of all 150 chromosomes revealed genomic structure, phylogeny and genome duplication history.
| Accession | PRJNA788516 |
| Type | Umbrella project |
| Organism | Carassius gibelio[Taxonomy ID: 101364] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Cyprinidae; Cyprininae; Carassius; Carassius gibelio |
| Grants | - "DFG eigene Stelle" (Grant ID KU3596/1-1, German Research Foundation)
- "EASI Genomics PID10218 - Asexual Invader" (Grant ID 824110, European Union’s Horizon 2020 research and innovation programme)
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| Submission | Registration date: 13-Dec-2021
IGB Leibniz-Institute of Freshwater Ecology and Inland Fisheries |
| Relevance | Evolution |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 131419 |
| WGS master | 3 |
| Transcript | 131166 |
| SRA Experiments | 8 |
| Protein Sequences | 90452 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 7 |
| Assembly | 3 |
This project encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes |
4
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