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Accession: PRJNA757291 ID: 757291

wastewater metagenome

GenomeTrakr umbrella for SARS-CoV-2 wastewater data

This umbrella links a set of data BioProjects, each established by a laboratory sequencing SARS-CoV-2 from wastewater samples.

This is a pandemic-response effort, supported by funding from the American Rescue Plan Act of 2021 to develop and implement SARS-CoV-2 variant surveillance in wastewater through the existing GenomeTrakr laboratory infrastructure. Data collected from this project will be used to monitor potential interruptions in the food supply chain and increase the safety of food production workers. These data can also be used to inform vaccine development and help provide FDA-CBER with real-time information for their review of vaccine applications and modifications.

AccessionPRJNA757291
TypeUmbrella project
SubmissionRegistration date: 24-Aug-2021
FDA Center for Food Safety and Applied Nutrition
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments3005
Publications
PubMed1
PMC1
Other datasets
BioSample3882
SRA Data Details
ParameterValue
Data volume, Gbases1,662
Data volume, Tbytes0.80
wastewater metagenome encompasses the following 24 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
SRA or Trace
No data links
Total

19
4
23
BioProject
accession
Assembly
level
OrganismTitle
PRJNA757447 SRA or Tracewastewater metagenomeGenomeTrakr wastewater project: US FDA, Center for Food Safety and Applied Nutrition (FDA Center for Food Safety...)
PRJNA761415 SRA or Tracewastewater metagenomeGenomeTrakr wastewater project: US FDA, Center for Food Safety and Applied Nutrition (OH ADDL submission group)
PRJNA762029 SRA or Tracewastewater metagenomeGenomeTrakr wastewater project: Massachusetts Department of Public Health (MASPHL Wastewater Surveillance...)
PRJNA762073 SRA or Tracewastewater metagenomeGenomeTrakr wastewater project: Washington State Department of Agriculture (Washington State Department...)
PRJNA764685 SRA or Tracewastewater metagenomeGenomeTrakr wastewater project: New Mexico State University | Food Safety Laboratory (The New Mexico State University...)
List all 23 'Genome sequencing' projects...
metagenome1
BioProject
accession
OrganismTitle
PRJNA865728Severe acute respiratory syndrome coronavirus 2SARS-CoV-2 wastewater surveillance in Arkansas Metagenome (National Center for Toxicological...)

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