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Accession: PRJNA687492 ID: 687492

Genome-inferred correspondence between phylogeny and metabolic traits in the wild Drosophila gut microbiome

The metabolic capability of microorganisms can be inferred from genome sequence data but metagenomics and related -omics methods, widely used to study complex microbial communities, including microbiomes in animal guts, have limited capacity to assign specific metabolic functions to specific taxa. More...
AccessionPRJNA687492
Data TypeGenome sequencing and assembly
ScopeMultispecies
Grants
  • "Animal- microbial interactions as an engine of phylogenetic and functional diversity: insights from interactions between drosophilids and their resident microbiota" (Grant ID BIO 1241099, National Science Foundation)
  • "Integrating the Metabolic Function and Population Dynamics of Gut Microbiota for Host Nutritional Health" (Grant ID R01 GM095372, National Institute of General Medical Sciences)
SubmissionRegistration date: 23-Dec-2020
Cornell University
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)81
SRA Experiments81
Other datasets
BioSample81
Assembly81
Assembly details:
Assembly levelNumber of Assemblies
52
29
81
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_018256975.1ContigJAERKS000000000SAMN17146156
Dm-38
GCA_018256985.1ContigJAERKT000000000SAMN17146157
Dm-55
GCA_018256955.1ContigJAERKU000000000SAMN17146158
Dm-48
GCA_018256935.1ScaffoldJAERKV000000000SAMN17146159
Dm-49
GCA_018256895.1ScaffoldJAERKW000000000SAMN17146160
Dm-46
GCA_018256865.1ScaffoldJAERKY000000000SAMN17146162
Dm-60
GCA_018256855.1ContigJAERLA000000000SAMN17146164
Dm-72
GCA_018256835.1ScaffoldJAERKZ000000000SAMN17146163
Dm-29
GCA_018256915.1ScaffoldJAERKX000000000SAMN17146161
Dm-59
GCA_018257795.1ScaffoldJAERJD000000000SAMN17146115
JGM124
GCA_018257775.1ScaffoldJAERJE000000000SAMN17146116
JGM58
GCA_018257815.1ScaffoldJAERJF000000000SAMN17146117
JGM43
GCA_018257755.1ScaffoldJAERJG000000000SAMN17146118
JGM37
GCA_018257715.1ScaffoldJAERJH000000000SAMN17146119
JGM127
GCA_018256775.1ScaffoldJAERLB000000000SAMN17146165
Dm-56
GCA_018256705.1ScaffoldJAERLH000000000SAMN17146171
Dm-79
GCA_018256695.1ContigJAERLG000000000SAMN17146170
Dm-69
GCA_018256615.1ContigJAERLJ000000000SAMN17146173
Dm-45
GCA_018256535.1ScaffoldJAERLN000000000SAMN17146177
Dm-23
GCA_018256515.1ScaffoldJAERLM000000000SAMN17146176
Dm-58
GCA_018256475.1ContigJAERLO000000000SAMN17146178
Dm-80
GCA_018256675.1ScaffoldJAERLI000000000SAMN17146172
Dm-13
GCA_018256655.1ContigJAERLK000000000SAMN17146174
Dm-57
GCA_018256635.1ContigJAERLL000000000SAMN17146175
Dm-25
GCA_018256815.1ScaffoldJAERLD000000000SAMN17146167
Dm-75
GCA_018256785.1ContigJAERLC000000000SAMN17146166
Dm-3
GCA_018256735.1ScaffoldJAERLE000000000SAMN17146168
Dm-76
GCA_018256755.1ContigJAERLF000000000SAMN17146169
Dm-77
GCA_018256435.1ContigJAERLP000000000SAMN17146179
Dm-27
GCA_018256375.1ScaffoldJAERLT000000000SAMN17146183
Dm-54
GCA_018256415.1ContigJAERLQ000000000SAMN17146180
Dm-16
GCA_018256285.1ScaffoldJAERLV000000000SAMN17146185
Dm-42
GCA_018256245.1ScaffoldJAERLS000000000SAMN17146182
Dm-47
GCA_018256235.1ScaffoldJAERLU000000000SAMN17146184
Dm-68
GCA_018256445.1ScaffoldJAERLR000000000SAMN17146181
Dm-18
GCA_018256175.1ContigJAERLZ000000000SAMN17146189
Dm-44
GCA_018256155.1ScaffoldJAERLY000000000SAMN17146188
Dm-62
GCA_018256215.1ContigJAERLW000000000SAMN17146186
Dm-73
GCA_018256135.1ScaffoldJAERLX000000000SAMN17146187
Dm-74
GCA_018256185.1ContigJAERMA000000000SAMN17146190
Dm-28
GCA_018256105.1ScaffoldJAERMB000000000SAMN17146191
Dm-21
GCA_018256095.1ScaffoldJAERMC000000000SAMN17146192
Dm-14
GCA_018256055.1ScaffoldJAERME000000000SAMN17146194
Dm-19
GCA_018256045.1ScaffoldJAERMF000000000SAMN17146195
Dm-15
GCA_018256035.1ContigJAERMD000000000SAMN17146193
Dm-17
GCA_018257735.1ScaffoldJAERJI000000000SAMN17146120
JGM22
GCA_018257685.1ScaffoldJAERJJ000000000SAMN17146121
JGM34
GCA_018257175.1ScaffoldJAERKI000000000SAMN17146146
Dm-2019-60
GCA_018257215.1ContigJAERKJ000000000SAMN17146147
Dm-2019-13
GCA_018257155.1ContigJAERKL000000000SAMN17146149
Dm-2019-48
GCA_018257135.1ScaffoldJAERKN000000000SAMN17146151
Dm-2019-3
GCA_018257115.1ScaffoldJAERKK000000000SAMN17146148
Dm-2019-28
GCA_018257075.1ContigJAERKM000000000SAMN17146150
Dm-2019-33
GCA_018257055.1ContigJAERKO000000000SAMN17146152
Dm-2019-12
GCA_018257095.1ContigJAERKP000000000SAMN17146153
Dm-9
GCA_018257035.1ContigJAERKQ000000000SAMN17146154
Dm-2019-54
GCA_018257235.1ScaffoldJAERKG000000000SAMN17146144
Dm-2019-10
GCA_018257185.1ScaffoldJAERKH000000000SAMN17146145
Dm-2019-67
GCA_018257245.1ScaffoldJAERKF000000000SAMN17146143
Dm-2019-70
GCA_018257275.1ContigJAERKD000000000SAMN17146141
Dm-2019-31
GCA_018257295.1ScaffoldJAERKE000000000SAMN17146142
Dm-2019-57
GCA_018257325.1ScaffoldJAERKB000000000SAMN17146139
JGM97
GCA_018257675.1ScaffoldJAERJK000000000SAMN17146122
JGM106
GCA_018257625.1ContigJAERJL000000000SAMN17146123
JGM112
GCA_018257655.1ScaffoldJAERJM000000000SAMN17146124
JGM49
GCA_018257475.1ScaffoldJAERJU000000000SAMN17146132
JGM232
GCA_018257415.1ScaffoldJAERJX000000000SAMN17146135
JGM187
GCA_018257455.1ScaffoldJAERJV000000000SAMN17146133
JGM76
GCA_018257395.1ScaffoldJAERJW000000000SAMN17146134
JGM226
GCA_018257405.1ContigJAERJZ000000000SAMN17146137
JGM172
GCA_018257355.1ContigJAERKA000000000SAMN17146138
JGM178
GCA_018257375.1ScaffoldJAERJY000000000SAMN17146136
JGM181
GCA_018257315.1ContigJAERKC000000000SAMN17146140
JGM70
GCA_018257615.1ContigJAERJO000000000SAMN17146126
JGM100
GCA_018257515.1ScaffoldJAERJR000000000SAMN17146129
JGM118
GCA_018257525.1ScaffoldJAERJS000000000SAMN17146130
JGM130
GCA_018257495.1ScaffoldJAERJT000000000SAMN17146131
JGM16
GCA_018257545.1ScaffoldJAERJQ000000000SAMN17146128
JGM82
GCA_018257575.1ScaffoldJAERJP000000000SAMN17146127
JGM91
GCA_018257595.1ScaffoldJAERJN000000000SAMN17146125
JGM94
GCA_018257015.1ScaffoldJAERKR000000000SAMN17146155
Dm-2019-34
SRA Data Details
ParameterValue
Data volume, Gbases124
Data volume, Mbytes53004

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