Pseudomonas sp. (ID 639797) - BioProject

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Accession: PRJNA639797 ID: 639797

Pseudomonas sp.

Multiple environmental isolates belonging to the Pseudomonas genus. Genome sequencing and assembly

This project includes genomics data from multiple new Pseudomonas species that are undergoing characterization.

Accession	PRJNA639797
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications (total 4) Less...	Cesa-Luna C et al., "Charting the Lipopeptidome of Nonpathogenic Pseudomonas.", mSystems, 2023 Feb 23;8(1):e0098822 More... Cesa-Luna C et al., "Charting the Lipopeptidome of Nonpathogenic Pseudomonas.", mSystems, 2023 Feb 23;8(1):e0098822 Girard L et al., "The Ever-Expanding Pseudomonas Genus: Description of 43 New Species and Partition of the Pseudomonas putida Group.", Microorganisms, 2021 Aug 18;9(8) Girard L et al., "Reliable Identification of Environmental Pseudomonas Isolates Using the rpoD Gene.", Microorganisms, 2020 Jul 31;8(8) Published online: Girard L et al., "The Ever-Expanding Pseudomonas Genus: Description of 43 New Species and Partition of the Pseudomonas putida Group", Microorganisms, 2021;9(8) Less...
Submission	Registration date: 16-Jun-2020 KU Leuven
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	73
WGS master	48
Genomic DNA	25
SRA Experiments	89
Protein Sequences	128196
Publications
PubMed	3
PMC	3
Other datasets
BioSample	73
Assembly	72

Assembly details:

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Assembly level

Number of Assemblies

24
1
47
72

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_019141525.1		1	SAMN19473664	SWRI17	Pseudomonas alvandae
GCA_014269225.2		1	SAMN15248309	RD8MR3	Pseudomonas anuradhapurensis
GCA_019139815.1		1	SAMN19473665	SWRI132	Pseudomonas asgharzadehiana
GCA_019139875.1		1	SAMN19473659	SWRI76	Pseudomonas atacamensis
GCA_019145355.1	JAHSTY000000000		SAMN19580037	SWRI103	Pseudomonas azadiae
GCA_019145495.1	JAHSTU000000000		SAMN19473663	SWRI74	Pseudomonas azerbaijanoccidentalis
GCA_019139795.1		1	SAMN19473666	SWRI123	Pseudomonas azerbaijanorientalis
GCA_019145475.1	JAHTKI000000000		SAMN19473668	COW3	Pseudomonas botevensis
GCA_019145435.1	JAHSTS000000000		SAMN19473669	COR58	Pseudomonas ekonensis
GCA_019139895.1		1	SAMN19473671	COW40	Pseudomonas fakonensis
GCA_019145235.1	JAHSTV000000000		SAMN19473662	SWRI79	Pseudomonas farris
GCA_014268805.2	JABWRF000000000		SAMN15248330	SWRI107	Pseudomonas farsensis
GCA_014268595.2		1	SAMN15248342	SWRI65	Pseudomonas hamedanensis
GCA_014268585.2		1	SAMN15248341	SWRI54	Pseudomonas iranensis
GCA_014269205.2	JABWRY000000000		SAMN15248311	SWRI100	Pseudomonas kermanshahensis
GCA_019145205.1	JAHSTT000000000		SAMN19473667	SWRI124	Pseudomonas khavaziana
GCA_014268505.2	JABWQP000000000		SAMN15248346	SWRI153	Pseudomonas khorasanensis
GCA_014269245.2	JABWSB000000000		SAMN15248308	RW1P2	Pseudomonas kurunegalensis
GCA_014268265.1	JABWQE000000000		SAMN15248359	PGSB 8273	Pseudomonas lurida
GCA_014268235.1	JABWQD000000000		SAMN15248360	PGSB 7828	Pseudomonas lurida
GCA_014268225.1	JABWQC000000000		SAMN15248361	PGSB 3962	Pseudomonas lurida
GCA_014268655.2	JABWQX000000000		SAMN15248338	SWRI102	Pseudomonas marvdashtae
GCA_019139675.1		1	SAMN19473670	COW77	Pseudomonas maumuensis
GCA_014268495.2		2	SAMN15248347	PGSB 8459	Pseudomonas monsensis
GCA_014268925.1	JABWRK000000000		SAMN15248325	BW18S1	Pseudomonas mosselii
GCA_014268895.1	JABWRL000000000		SAMN15248324	RW5S2	Pseudomonas mosselii
GCA_019139535.1		1	SAMN19473673	COW39	Pseudomonas muyukensis
GCA_014269185.2	JABWRZ000000000		SAMN15248310	RD9SR1	Pseudomonas oryzicola
GCA_014268365.1	JABWQI000000000		SAMN15248354	SWRI70	Pseudomonas paralactis
GCA_014268935.2	JABWRJ000000000		SAMN15248326	BW13M1	Pseudomonas peradeniyensis
GCA_014268305.1	JABWQH000000000		SAMN15248355	SWRI2	Pseudomonas poae
GCA_014269025.2		1	SAMN15248319	RW10S1	Pseudomonas promysalinigenes
GCA_014268405.1	JABWQL000000000		SAMN15248351	SWRI104	Pseudomonas proteolytica
GCA_014268375.2		1	SAMN15248353	SWRI126	Pseudomonas salmasensis
GCA_019139855.1		1	SAMN19580036	CMR12a	Pseudomonas sessilinigenes
GCA_014268455.2		1	SAMN15248350	SWRI52	Pseudomonas shahriarae
GCA_014268785.2	JABWRD000000000		SAMN15248332	SWRI56	Pseudomonas shirazensis
GCA_019145195.1	JAHSTW000000000		SAMN19473661	SWRI31	Pseudomonas siliginis
GCA_014268865.1	JABWRI000000000		SAMN15248327	BW16M2	Pseudomonas sp. BW16M2
GCA_014268205.2		1	SAMN15248362	OE 28.3	Pseudomonas sp. OE 28.3
GCA_014268985.1	JABWRO000000000		SAMN15248321	RW10S2	Pseudomonas sp. RW10S2
GCA_014268955.1	JABWRM000000000		SAMN15248323	RW3S2	Pseudomonas sp. RW3S2
GCA_014268555.1	JABWQQ000000000		SAMN15248345	SWRI111	Pseudomonas sp. SWRI111
GCA_014268285.2	JABWQG000000000		SAMN15248357	SWRI144	Pseudomonas sp. SWRI144
GCA_014268645.1	JABWQW000000000		SAMN15248339	SWRI154	Pseudomonas sp. SWRI154
GCA_014268705.1	JABWRA000000000		SAMN15248335	SWRI179	Pseudomonas sp. SWRI179
GCA_014268345.1	JACCQQ000000000		SAMN15248356	SWRI18	Pseudomonas sp. SWRI18
GCA_014268395.2	JABWQK000000000		SAMN15248352	SWRI22	Pseudomonas sp. SWRI22
GCA_014269095.1	JABWRW000000000		SAMN15248313	SWRI50	Pseudomonas sp. SWRI50
GCA_014268825.1	JABWRG000000000		SAMN15248329	SWRI51	Pseudomonas sp. SWRI51
GCA_014269115.1	JABWRT000000000		SAMN15248316	SWRI59	Pseudomonas sp. SWRI59
GCA_014269235.1	JABWRX000000000		SAMN15248312	SWRI67	Pseudomonas sp. SWRI67
GCA_014269165.1	JABWRU000000000		SAMN15248315	SWRI68	Pseudomonas sp. SWRI68
GCA_014269105.1	JABWRV000000000		SAMN15248314	SWRI77	Pseudomonas sp. SWRI77
GCA_014268545.1	JABWQS000000000		SAMN15248343	SWRI81	Pseudomonas sp. SWRI81
GCA_014268685.1	JABWQY000000000		SAMN15248337	SWRI92	Pseudomonas sp. SWRI92
GCA_014270125.1	JABWQR000000000		SAMN15248344	SWRI99	Pseudomonas sp. SWRI99
GCA_014269085.1	JABWRS000000000		SAMN15248317	RW7P2	Pseudomonas taiwanensis
GCA_014269045.1	JABWRR000000000		SAMN15248318	RW2S1	Pseudomonas taiwanensis
GCA_014268615.1	JABWQV000000000		SAMN15248340	SWRI196	Pseudomonas tehranensis
GCA_014268445.2		1	SAMN15248349	ZA 5.3	Pseudomonas tensinigenes
GCA_014268275.3		1	SAMN15248358	SWRI145	Pseudomonas tritici
GCA_019145375.1	JAHSTX000000000		SAMN19473660	SWRI88	Pseudomonas triticicola
GCA_014268815.2	JABWRE000000000		SAMN15248331	SWRI10	Pseudomonas urmiensis
GCA_014268755.2		1	SAMN15248333	RW8P3	Pseudomonas vanderleydeniana
GCA_014269035.2	JABWRP000000000		SAMN15248320	RW4S2	Pseudomonas vlassakiae
GCA_014268975.2		1	SAMN15248322	RW3S1	Pseudomonas wayambapalatensis
GCA_014268885.2		1	SAMN15248328	RW9S1A	Pseudomonas xantholysinigenes
GCA_019139835.1		1	SAMN19473672	COR54	Pseudomonas xanthosomatis
GCA_014268745.2	JABWRB000000000		SAMN15248334	SWRI12	Pseudomonas zanjanensis
GCA_014268695.2		1	SAMN15248336	SWRI108	Pseudomonas zarinae
GCA_014268485.2		1	SAMN15248348	OE 48.2	Pseudomonas zeae

SRA Data Details

Parameter	Value
Data volume, Gbases	58
Data volume, Mbytes	34929

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Pseudomonas sp.

Multiple environmental isolates belonging to the Pseudomonas genus. Genome sequencing and assembly

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