This SuperSeries is composed of the SubSeries listed below.
For processing workflows and scripts, please refer to https://github.com/jonipsaro/asterix_gtsf1
Overall design: Refer to individual Series
| Accession | PRJNA634754; GEO: GSE151112 |
| Type | Umbrella project |
| Publications | Ipsaro JJ et al., "Asterix/Gtsf1 links tRNAs and piRNA silencing of retrotransposons.", Cell Rep, 2021 Mar 30;34(13):108914 |
| Grants | - "Structural Basis for RNA-induced Silencing via the Piwi Clade of Argonautes" (Grant ID F32 GM097888, National Institute of General Medical Sciences)
|
| Submission | Registration date: 24-May-2020
Leemor Joshua-Tor, Cold Spring Harbor Laboratory |
| Relevance | Superseries |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 24 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 24 |
| GEO DataSets | 5 |
Asterix/Gtsf1 links tRNAs and piRNA silencing of retrotransposons encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
| Other | 4 |
BioProject
accession | Organism | Title |
|---|
| PRJNA634750 | Drosophila melanogaster | eCLIP of Drosophila Asterix/Gtsf1 transfected in Drosophila ovarian somatic sheath (OSS) cells (Leemor Joshua-Tor, Cold Spring...) | | PRJNA634752 | Drosophila melanogaster | eCLIP of Drosophila Asterix/Gtsf1 (endogenous promoter) in Drosophila ovarian somatic sheath (OSS) cells (Leemor Joshua-Tor, Cold Spring...) | | PRJNA634751 | Mus musculus | eCLIP of mouse Asterix/Gtsf1 transfected in mouse P19 embryonal teratoma cells (Leemor Joshua-Tor, Cold Spring...) | | PRJNA634753 | Spodoptera frugiperda | RIP-seq of mouse Asterix/Gtsf1 expressed in Sf9 cells (Leemor Joshua-Tor, Cold Spring...) |
|