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Accession: PRJNA611810 ID: 611810

Escherichia coli

Commensal E. coli genome sequencing and assembly

Escherichia coli Genome sequencing and assembly
AccessionPRJNA611810
Data TypeGenome sequencing and assembly
ScopeMultispecies
Grants
  • "A Genomics Based Investigation of the Determinants of Polymicrobial Infectious Disease Outcomes" (Grant ID U19 AI110820, National Institute of Allergy and Infectious Diseases Extramural Activities)
SubmissionRegistration date: 10-Mar-2020
University of Maryland, School of Medicine
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)512
SRA Experiments514
Other datasets
BioSample514
Assembly512
Assembly details:
Assembly levelNumber of Assemblies
512
512
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_030003115.1ContigJAAPFO000000000SAMN14349618
100218
GCA_018424825.1ContigJAATKF000000000SAMN14349909
700461
GCA_018424785.1ContigJAATKH000000000SAMN14349875
600083
GCA_018424775.1ContigJAATKI000000000SAMN14349864
600067
GCA_018424765.1ContigJAATKG000000000SAMN14349888
700022
GCA_044134325.1ContigJAAVXJ000000000SAMN14349910
EC700462
GCA_030003095.1ContigJAAPFK000000000SAMN14349623
100300
GCA_030003035.1ContigJAAPFN000000000SAMN14349619
100221
GCA_030003075.1ContigJAAPFI000000000SAMN14349625
100305
GCA_030002495.1ContigJAAPER000000000SAMN14349649
200088
GCA_030002475.1ContigJAAPEQ000000000SAMN14349650
200089
GCA_030002455.1ContigJAAPEO000000000SAMN14349652
200091
GCA_030003275.1ContigJAAPFX000000000SAMN14349609
100164
GCA_030003255.1ContigJAAPFW000000000SAMN14349610
100167
GCA_030003235.1ContigJAAPFU000000000SAMN14349612
100181
GCA_030003215.1ContigJAAPFT000000000SAMN14349613
100187
GCA_030003195.1ContigJAAPFS000000000SAMN14349614
100189
GCA_030003175.1ContigJAAPFR000000000SAMN14349615
100190
GCA_030003135.1ContigJAAPFQ000000000SAMN14349616
100195
GCA_030003155.1ContigJAAPFP000000000SAMN14349617
100209
GCA_030003045.1ContigJAAPFM000000000SAMN14349620
100247
GCA_030002995.1ContigJAAPFJ000000000SAMN14349624
100301
GCA_030003015.1ContigJAAPFL000000000SAMN14349622
100299
GCA_030002975.1ContigJAAPFF000000000SAMN14349628
100341
GCA_030002955.1ContigJAAPFH000000000SAMN14349626
100312
GCA_030002915.1ContigJAAPFE000000000SAMN14349629
100346
GCA_030002935.1ContigJAAPFG000000000SAMN14349627
100315
GCA_030002895.1ContigJAATEE000000000SAMN14349634
100399
GCA_030002855.1ContigJAATDN000000000SAMN14349631
100354
GCA_030002875.1ContigJAAPFD000000000SAMN14349630
100350
GCA_030002835.1ContigJAAPFC000000000SAMN14349633
100373
GCA_030002815.1ContigJAATDM000000000SAMN14349632
100361
GCA_030002795.1ContigJAATDL000000000SAMN14349635
100416
GCA_030002755.1ContigJAAPFA000000000SAMN14349637
100426
GCA_030002775.1ContigJAAPFB000000000SAMN14349636
100419
GCA_030002735.1ContigJAAPEZ000000000SAMN14349638
100434
GCA_030002715.1ContigJAAPEY000000000SAMN14349639
200010
GCA_030002695.1ContigJAATED000000000SAMN14349640
200033
GCA_030002675.1ContigJAAPEX000000000SAMN14349641
200044
GCA_030002655.1ContigJAAPEW000000000SAMN14349642
200045
GCA_030002635.1ContigJAATEC000000000SAMN14349646
200054
GCA_030002615.1ContigJAAPEV000000000SAMN14349643
200048
GCA_030002595.1ContigJAAPEU000000000SAMN14349644
200051
GCA_030002575.1ContigJAAPET000000000SAMN14349645
200053
GCA_030002555.1ContigJAATEB000000000SAMN14349647
200086
GCA_030002535.1ContigJAAPES000000000SAMN14349648
200087
GCA_030002515.1ContigJAAPEP000000000SAMN14349651
200090
GCA_030001935.1ContigJAAPDW000000000SAMN14349680
200456
GCA_030001915.1ContigJAAPDV000000000SAMN14349681
200505
GCA_030001895.1ContigJAATDC000000000SAMN14349678
200444
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200451
GCA_030001855.1ContigJAATDB000000000SAMN14349683
200826
GCA_030001835.1ContigJAAPDU000000000SAMN14349682
200809
GCA_030002155.1ContigJAAPEG000000000SAMN14349667
EC200146
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200164
GCA_030002095.1ContigJAATDD000000000SAMN14349675
200212
GCA_030002115.1ContigJAAPED000000000SAMN14349670
200166
GCA_030002055.1ContigJAAPEC000000000SAMN14349671
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GCA_030002075.1ContigJAAPEF000000000SAMN14349668
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200170
GCA_030002015.1ContigJAAPEA000000000SAMN14349674
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GCA_030001975.1ContigJAAPDY000000000SAMN14349677
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GCA_030001995.1ContigJAATDE000000000SAMN14349673
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GCA_030001955.1ContigJAAPDZ000000000SAMN14349676
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GCA_030002215.1ContigJAAPEI000000000SAMN14349665
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GCA_030002195.1ContigJAAPEK000000000SAMN14349662
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GCA_030002175.1ContigJAAPEJ000000000SAMN14349664
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GCA_030002355.1ContigJAATDJ000000000SAMN14349657
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GCA_030002335.1ContigJAAPEH000000000SAMN14349666
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GCA_030002295.1ContigJAATDI000000000SAMN14349659
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GCA_030002315.1ContigJAAPEL000000000SAMN14349658
200104
GCA_030002255.1ContigJAATDF000000000SAMN14349663
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GCA_030002275.1ContigJAATDH000000000SAMN14349660
200107
GCA_030002235.1ContigJAATDG000000000SAMN14349661
200108
GCA_030001395.1ContigJAATCG000000000SAMN14349704
300091
GCA_030001375.1ContigJAATCD000000000SAMN14349708
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GCA_030001355.1ContigJAATCE000000000SAMN14349706
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GCA_030001335.1ContigJAATDZ000000000SAMN14349707
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GCA_030001455.1ContigJAATCI000000000SAMN14349702
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GCA_030001435.1ContigJAATCH000000000SAMN14349703
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GCA_030001415.1ContigJAATCF000000000SAMN14349705
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GCA_030001315.1ContigJAATCC000000000SAMN14349709
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GCA_030001295.1ContigJAAPDT000000000SAMN14349710
300199
GCA_030001275.1ContigJAAPDS000000000SAMN14349711
300247
GCA_030001255.1ContigJAAPDR000000000SAMN14349712
300409
GCA_030001235.1ContigJAAPDQ000000000SAMN14349713
300411
GCA_030001215.1ContigJAAPDP000000000SAMN14349714
300416
GCA_030001195.1ContigJAATDY000000000SAMN14349715
300418
GCA_030001175.1ContigJAAPDN000000000SAMN14349717
300428
GCA_030001155.1ContigJAAPDO000000000SAMN14349716
300422
GCA_030001815.1ContigJAATDA000000000SAMN14349684
201235
GCA_030001775.1ContigJAATCX000000000SAMN14349687
300003
GCA_030001795.1ContigJAATCZ000000000SAMN14349685
202231
GCA_030001755.1ContigJAATCY000000000SAMN14349686
203449
GCA_030001735.1ContigJAATCW000000000SAMN14349688
300010
GCA_030001715.1ContigJAATCV000000000SAMN14349689
300013
GCA_030001695.1ContigJAATCP000000000SAMN14349695
300039
GCA_030001675.1ContigJAATCS000000000SAMN14349692
300032
GCA_030001655.1ContigJAATCU000000000SAMN14349690
300014
GCA_030001635.1ContigJAATCR000000000SAMN14349693
300033
GCA_030001615.1ContigJAATCT000000000SAMN14349691
300027
GCA_030001595.1ContigJAATCQ000000000SAMN14349694
300038
GCA_030001575.1ContigJAATCN000000000SAMN14349697
300062
GCA_030002435.1ContigJAATDK000000000SAMN14349654
200094
GCA_030002415.1ContigJAATEA000000000SAMN14349653
200093
GCA_030002375.1ContigJAAPEM000000000SAMN14349656
200100
GCA_030001555.1ContigJAATCM000000000SAMN14349698
300066
GCA_030001535.1ContigJAATCO000000000SAMN14349696
300060
GCA_030001515.1ContigJAATCK000000000SAMN14349700
300078
GCA_030001495.1ContigJAATCL000000000SAMN14349699
300068
GCA_030001475.1ContigJAATCJ000000000SAMN14349701
300081
GCA_030001115.1ContigJAAPDL000000000SAMN14349719
300437
GCA_030001095.1ContigJAATDX000000000SAMN14349720
300438
GCA_030001075.1ContigJAATCB000000000SAMN14349722
300441
GCA_030001055.1ContigJAAPDK000000000SAMN14349721
300439
GCA_030001015.1ContigJAAPDI000000000SAMN14349725
300456
GCA_030001035.1ContigJAAPDJ000000000SAMN14349723
300444
GCA_030000975.1ContigJAAPDG000000000SAMN14349727
300482
GCA_030000995.1ContigJAATDW000000000SAMN14349724
300446
GCA_030000955.1ContigJAAPDH000000000SAMN14349726
300479
GCA_030000915.1ContigJAATCA000000000SAMN14349729
300486
GCA_030000935.1ContigJAAPDF000000000SAMN14349728
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GCA_030000895.1ContigJAATBZ000000000SAMN14349730
300490
GCA_030000855.1ContigJAAPDB000000000SAMN14349734
300541
GCA_030000875.1ContigJAAPDE000000000SAMN14349731
300491
GCA_030000835.1ContigJAAPDD000000000SAMN14349732
300494
GCA_030000815.1ContigJAAPDC000000000SAMN14349733
300537
GCA_030000795.1ContigJAAPCZ000000000SAMN14349736
400609
GCA_030000775.1ContigJAAPDA000000000SAMN14349735
300542
GCA_030001135.1ContigJAAPDM000000000SAMN14349718
300429
GCA_030000755.1ContigJAAPCY000000000SAMN14349737
400611
GCA_030000735.1ContigJAAPCX000000000SAMN14349738
400615
GCA_030000715.1ContigJAATBX000000000SAMN14349740
400620
GCA_030000695.1ContigJAATBY000000000SAMN14349739
400618
GCA_030000675.1ContigJAAPCV000000000SAMN14349742
400622
GCA_030000655.1ContigJAAPCW000000000SAMN14349741
400621
GCA_030000615.1ContigJAAPCU000000000SAMN14349743
400625
GCA_030000595.1ContigJAAPCS000000000SAMN14349745
400628
GCA_030000575.1ContigJAAPCT000000000SAMN14349744
400627
GCA_030000555.1ContigJAAPCR000000000SAMN14349746
400629
GCA_030000535.1ContigJAAPCQ000000000SAMN14349747
400630
GCA_030000495.1ContigJAAPCN000000000SAMN14349750
400633
GCA_030000515.1ContigJAAPCP000000000SAMN14349748
400631
GCA_030000455.1ContigJAATDV000000000SAMN14349751
400634
GCA_030000435.1ContigJAAPCK000000000SAMN14349754
400639
GCA_030000415.1ContigJAAPCL000000000SAMN14349753
400637
GCA_030000395.1ContigJAAPCI000000000SAMN14349757
400647
GCA_030000375.1ContigJAATDU000000000SAMN14349755
400641
GCA_030000355.1ContigJAAPCJ000000000SAMN14349756
400645
GCA_030000335.1ContigJAAPCH000000000SAMN14349758
400648
GCA_030000315.1ContigJAAPCG000000000SAMN14349759
400653
GCA_030000635.1ContigJAAPCO000000000SAMN14349749
400632
GCA_030000475.1ContigJAAPCM000000000SAMN14349752
EC400636
GCA_030000295.1ContigJAAPCF000000000SAMN14349761
400660
GCA_030000275.1ContigJAATBW000000000SAMN14349760
400659
GCA_030000255.1ContigJAATBV000000000SAMN14349762
400661
GCA_030000235.1ContigJAAPCE000000000SAMN14349763
400678
GCA_030000215.1ContigJAAPCD000000000SAMN14349764
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GCA_030000195.1ContigJAATDT000000000SAMN14349765
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GCA_030000175.1ContigJAAPCC000000000SAMN14349766
400782
GCA_030000155.1ContigJAATBU000000000SAMN14349767
400783
GCA_030000075.1ContigJAATBT000000000SAMN14349771
400790
GCA_030000095.1ContigJAAPBZ000000000SAMN14349770
EC400787
GCA_030000055.1ContigJAATBS000000000SAMN14349772
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GCA_030000035.1ContigJAAPBW000000000SAMN14349775
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GCA_030000135.1ContigJAAPCA000000000SAMN14349769
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GCA_030000115.1ContigJAAPCB000000000SAMN14349768
400784
GCA_030000015.1ContigJAAPBX000000000SAMN14349774
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GCA_029999995.1ContigJAAPBY000000000SAMN14349773
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GCA_029999975.1ContigJAAPBV000000000SAMN14349776
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GCA_029999955.1ContigJAAPBU000000000SAMN14349779
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GCA_029999935.1ContigJAATBR000000000SAMN14349777
400802
GCA_029999915.1ContigJAATBP000000000SAMN14349780
401420
GCA_029999895.1ContigJAATBQ000000000SAMN14349778
400994
GCA_029999875.1ContigJAATBL000000000SAMN14349785
500001
GCA_029999835.1ContigJAATBO000000000SAMN14349781
401651
GCA_029999855.1ContigJAATBN000000000SAMN14349782
401653
GCA_029999795.1ContigJAATBM000000000SAMN14349783
401656
GCA_029999815.1ContigJAAPBT000000000SAMN14349784
401658
GCA_029999775.1ContigJAATBK000000000SAMN14349787
500003
GCA_029999755.1ContigJAATDS000000000SAMN14349786
500002
GCA_029999735.1ContigJAATBJ000000000SAMN14349788
500005
GCA_029999715.1ContigJAATBI000000000SAMN14349789
500006
GCA_029999695.1ContigJAATBH000000000SAMN14349790
500008
GCA_029999655.1ContigJAATBF000000000SAMN14349792
500011
GCA_029999635.1ContigJAATBC000000000SAMN14349795
500016
GCA_029999615.1ContigJAATBE000000000SAMN14349793
500012
GCA_029999595.1ContigJAAPBS000000000SAMN14349796
500019
GCA_029999675.1ContigJAATBG000000000SAMN14349791
500010
GCA_030005795.1ContigJAAQJZ000000000SAMN14350030
com_2361
GCA_030005935.1ContigJAAQKA000000000SAMN14350029
com_2353_C04
GCA_030005925.1ContigJAAQKE000000000SAMN14350025
com_2315_C04
GCA_030005905.1ContigJAAQKC000000000SAMN14350027
com_2325_C04
GCA_030005895.1ContigJAAQKB000000000SAMN14350028
com_2350_C04
GCA_030005875.1ContigJAAQJY000000000SAMN14350031
com_2361_C04
GCA_030006475.1ContigJAAQLE000000000SAMN14349999
com_2168_C04
GCA_030006495.1ContigJAAQLG000000000SAMN14349997
com_2164
GCA_030006075.1ContigJAAQKK000000000SAMN14350019
com_2247_C04
GCA_030006055.1ContigJAAQKH000000000SAMN14350022
com_2271_C04
GCA_030006035.1ContigJAAQKI000000000SAMN14350021
com_2271
GCA_030006015.1ContigJAAQKJ000000000SAMN14350020
com_2269_C04
GCA_030005975.1ContigJAAQKF000000000SAMN14350024
com_2314_CO4
GCA_030005995.1ContigJAAQKG000000000SAMN14350023
com_2309_C04
GCA_030006215.1ContigJAAQKN000000000SAMN14350016
com_2245
GCA_030006175.1ContigJAAQKQ000000000SAMN14350013
com_2231_C04
GCA_030006185.1ContigJAAQKR000000000SAMN14350012
com_2225_C04
GCA_030006155.1ContigJAAQKP000000000SAMN14350014
com_2235_C04
GCA_030006125.1ContigJAAQKL000000000SAMN14350018
com_2246_C04
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com_2245_C04
GCA_030006115.1ContigJAAQKO000000000SAMN14350015
com_2243_C04
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com_2171_C04
GCA_030006415.1ContigJAAQLA000000000SAMN14350003
com_2177
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com_2174_C04
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com_2171
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com_2184_C04
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com_2218
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com_2224_C04
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com_2460_C04
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com_2369_C04
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com_3137
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com_3199
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com_604
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com_789
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com_714
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100002
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com_949
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com_2730_C04
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com_2718_C04
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com_2781_C04
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com_3030
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com_3078
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com_2623_C04
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com_2657_CO4
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com_2648
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com_2631_C04
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com_2658_C04
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com_2674_C04
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com_27
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com_2698
GCA_030004355.1ContigJAAQIM000000000SAMN14350069
com_2714_C04
GCA_029998855.1ContigJAASZX000000000SAMN14349833
600008
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600007
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500151
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500164
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600003
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EC600001
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500146
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500145
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500148
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500147
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EC500153
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500156
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600015
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600017
GCA_029998655.1ContigJAASZO000000000SAMN14349843
600024
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EC600034
GCA_029998595.1ContigJAASZN000000000SAMN14349844
600027
GCA_029998695.1ContigJAASZR000000000SAMN14349839
600016
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600019
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600028
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600036
GCA_029998535.1ContigJAASZL000000000SAMN14349846
600029
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EC600032
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600037
GCA_029999575.1ContigJAATBD000000000SAMN14349794
500013
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500021
GCA_029999535.1ContigJAATBA000000000SAMN14349798
500022
GCA_029999515.1ContigJAATAZ000000000SAMN14349799
500024
GCA_029999495.1ContigJAAPBR000000000SAMN14349800
500027
GCA_029999475.1ContigJAAPBQ000000000SAMN14349802
500032
GCA_029999415.1ContigJAATAV000000000SAMN14349805
500037
GCA_029999395.1ContigJAATAW000000000SAMN14349804
500036
GCA_029999375.1ContigJAATAU000000000SAMN14349806
500040
GCA_029999355.1ContigJAATAT000000000SAMN14349807
500111
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500112
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500113
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500122
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500114
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500127
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500123
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500129
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500137
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500138
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500029
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500034
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500144
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600039
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600043
GCA_029998435.1ContigJAAPBK000000000SAMN14349852
600042
GCA_029998415.1ContigJAASZF000000000SAMN14349854
600045
GCA_029998395.1ContigJAATDQ000000000SAMN14349855
600047
GCA_029998375.1ContigJAAPBJ000000000SAMN14349856
600051
GCA_029998355.1ContigJAASZE000000000SAMN14349857
600052
GCA_029998335.1ContigJAAPBI000000000SAMN14349858
600055
GCA_029998315.1ContigJAAPBG000000000SAMN14349860
600061
GCA_029998295.1ContigJAASZD000000000SAMN14349861
600063
GCA_029998275.1ContigJAAPBH000000000SAMN14349859
600059
GCA_029998215.1ContigJAASYW000000000SAMN14349869
600074
GCA_029998195.1ContigJAASYZ000000000SAMN14349866
600070
GCA_029998175.1ContigJAASZA000000000SAMN14349865
600068
GCA_029998155.1ContigJAASYY000000000SAMN14349867
600071
GCA_029998135.1ContigJAASYX000000000SAMN14349868
600072
GCA_029998115.1ContigJAASYV000000000SAMN14349870
600075
GCA_029998095.1ContigJAASYU000000000SAMN14349871
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GCA_029998055.1ContigJAASYS000000000SAMN14349873
600078
GCA_029998035.1ContigJAASYC000000000SAMN14349891
700027
GCA_029998015.1ContigJAASYR000000000SAMN14349874
600079
GCA_029997995.1ContigJAASYP000000000SAMN14349877
600085
GCA_029998255.1ContigJAASZB000000000SAMN14349863
600066
GCA_029998235.1ContigJAASZC000000000SAMN14349862
600065
GCA_029997975.1ContigJAASYQ000000000SAMN14349876
600084
GCA_029997955.1ContigJAASYA000000000SAMN14349893
700030
GCA_029997935.1ContigJAASYO000000000SAMN14349878
700001
GCA_029997915.1ContigJAASYN000000000SAMN14349879
700003
GCA_029997895.1ContigJAASYM000000000SAMN14349880
700005
GCA_029997875.1ContigJAASYK000000000SAMN14349882
700013
GCA_029997855.1ContigJAASYL000000000SAMN14349881
700009
GCA_029997835.1ContigJAASYJ000000000SAMN14349883
700014
GCA_029997805.1ContigJAASYI000000000SAMN14349884
700016
GCA_029997795.1ContigJAASYH000000000SAMN14349885
700017
GCA_029997775.1ContigJAASYG000000000SAMN14349886
EC700019
GCA_029997755.1ContigJAASYF000000000SAMN14349887
700020
GCA_029997735.1ContigJAASXS000000000SAMN14349901
700446
GCA_029997715.1ContigJAASYE000000000SAMN14349889
700023
GCA_029997695.1ContigJAASXO000000000SAMN14349905
700450
GCA_029997675.1ContigJAASYD000000000SAMN14349890
700025
GCA_029997655.1ContigJAASYB000000000SAMN14349892
700028
GCA_029997615.1ContigJAASXY000000000SAMN14349895
700032
GCA_029997595.1ContigJAASXV000000000SAMN14349898
700443
GCA_029997555.1ContigJAASXW000000000SAMN14349897
700167
GCA_029997535.1ContigJAASXT000000000SAMN14349900
700445
GCA_029997515.1ContigJAASXU000000000SAMN14349899
700444
GCA_029997485.1ContigJAASXR000000000SAMN14349902
700447
GCA_029997475.1ContigJAASXQ000000000SAMN14349903
700448
GCA_029997395.1ContigJAASXN000000000SAMN14349906
700451
GCA_029997405.1ContigJAASXM000000000SAMN14349907
700456
GCA_029997375.1ContigJAASXK000000000SAMN14349911
700463
GCA_029997295.1ContigJAASXI000000000SAMN14349913
700470
GCA_029997275.1ContigJAASXF000000000SAMN14349916
700486
GCA_029997255.1ContigJAASXA000000000SAMN14349922
700497
GCA_029997335.1ContigJAASXG000000000SAMN14349915
EC700481
GCA_029997315.1ContigJAASXH000000000SAMN14349914
700477
GCA_029997235.1ContigJAASXE000000000SAMN14349917
700487
GCA_029997215.1ContigJAASXD000000000SAMN14349918
700489
GCA_029997155.1ContigJAASXB000000000SAMN14349921
700496
GCA_029997135.1ContigJAASWZ000000000SAMN14349923
700498
GCA_029997195.1ContigJAATDP000000000SAMN14349919
EC700490
GCA_029997175.1ContigJAASXC000000000SAMN14349920
700491
GCA_029997095.1ContigJAASWY000000000SAMN14349924
700499
GCA_030016135.1ContigJAATEF000000000SAMN14349621
100248
GCA_030019675.1ContigJAASXL000000000SAMN14349908
700460
GCA_030019655.1ContigJAASXX000000000SAMN14349896
700035
GCA_030019635.1ContigJAASXP000000000SAMN14349904
700449
GCA_030019615.1ContigJAASXZ000000000SAMN14349894
700031
GCA_030019595.1ContigJAASXJ000000000SAMN14349912
700466
GCA_024722075.1ContigJABYMV000000000SAMN15367813
com_1802_C04
SRA Data Details
ParameterValue
Data volume, Gbases686
Data volume, Tbytes0.34

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