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Accession: PRJNA531796 ID: 531796

De novo genome assembly of 4 African killifishes and resequencing of 41 additional Nothobranchiidae species, population resequencing of N. rachovii and N. orthonotus

De novo assembly of 4 killifish species and resequencing of additional Nothobranchiidae species and populations.

To uncover the selective forces shaping lifespan evolution, we investigate the genomic

basis underlying adaptations to seasonal habitat desiccation in African killifishes,

identifying the genetic variants associated with positive and relaxed purifying selection

in 45 killifish species (4 reference genomes assembled) and 231 wild individuals distributed throughout sub-Saharan

Africa.

AccessionPRJNA531796
Data TypeGenome sequencing and assembly
ScopeMultispecies
PublicationsCui R et al., "Relaxed Selection Limits Lifespan by Increasing Mutation Load.", Cell, 2019 Jul 11;178(2):385-399.e20
SubmissionRegistration date: 10-Apr-2019
Max Planck Institute for Biology of Ageing
Related Resources
RelevanceEvolution
Locus Tag PrefixE6C63
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)47
WGS master4
Genomic DNA43
SRA Experiments418
Protein Sequences533
Publications
PubMed1
Other datasets
BioSample285
Assembly4
Genome assemblies, organelles and plasmids:
Assembly GCA_006937955.1 :
NameGenBank
Whole Genome Shotgun AssemblySSNP00000000
Assembly GCA_006937965.1 :
NameGenBank
Whole Genome Shotgun AssemblySSNR00000000
Assembly GCA_006937985.1 :
NameGenBank
Whole Genome Shotgun AssemblySSNS00000000
Assembly GCA_006942095.1 :
NameGenBank
Whole Genome Shotgun AssemblySSNQ00000000
SRA Data Details
ParameterValue
Data volume, Gbases1,938
Data volume, Tbytes0.93

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