Streptococcus pneumoniae (ID 514780) - BioProject

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Accession: PRJNA514780 ID: 514780

Streptococcus pneumoniae

Streptococcus pneumoniae pan-genome influence over gene essentiality and in vivo genetic requirements.

See Genome Information for Streptococcus pneumoniae

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735 additional projects are related by organism.

In this project, we utilized PacBio SMRT sequencing to obtain complete genomes and methylomes of a strain collection of S. More...

Accession	PRJNA514780
Data Type	Genome sequencing
Scope	Multiisolate
Organism	Streptococcus pneumoniae[Taxonomy ID: 1313] Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus pneumoniae
Publications	Published online: Rosconi F et al., "A bacterial pan-genome makes gene essentiality strain-dependent and evolvable", Nature Microbiology, 2022;
Grants	"The SyngenicDNA and ?POET Platform: Overcoming Innate Barriers to Genetic Engineering in Bacteria." (Grant ID R01 DE027850, National Institute of Dental and Craniofacial Research) "The bacterial response to antibiotics and the evolution of antibiotic resistance" (Grant ID R01 AI110724, National Institute of Allergy and Infectious Diseases Extramural Activities) "Predicting species-wide virulence for a bacterial pathogen with a large pan-genome" (Grant ID R21 AI117247, National Institute of Allergy and Infectious Diseases Extramural Activities) "Predicting the emergence of antibiotic resistance through multi-omics approaches and Immune System-surveillan" (Grant ID U01 AI124302, National Institute of Allergy and Infectious Diseases Extramural Activities)
Submission	Registration date: 28-Sep-2021 Boston College
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	33
SRA Experiments	758
Protein Sequences	66385
Other datasets
BioSample	36
Assembly	33

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Chromosome

Total

31
2
33

Assembly	Chrs	BioSample	Strain	Taxonomy
GCA_022068405.1	1	SAMN10734515	TVO_1901926	Streptococcus pneumoniae
GCA_022068285.1	1	SAMN10734516	TVO_1901927	Streptococcus pneumoniae
GCA_022068265.1	1	SAMN10734517	TVO_1901928	Streptococcus pneumoniae
GCA_022068245.1	1	SAMN10734537	TVO_Taiwan19F-14	Streptococcus pneumoniae
GCA_022068225.1	1	SAMN10734535	TVO_TIGR4	Streptococcus pneumoniae
GCA_022068525.1	1	SAMN10734514	TVO_1901925	Streptococcus pneumoniae
GCA_022068645.1	1	SAMN10734513	TVO_1901924	Streptococcus pneumoniae
GCA_022068765.1	1	SAMN10734512	TVO_1901923	Streptococcus pneumoniae
GCA_022069545.1	1	SAMN10734526	TVO_1901939	Streptococcus pneumoniae
GCA_022069785.1	1	SAMN10734525	TVO_1901938	Streptococcus pneumoniae
GCA_022069645.1	1	SAMN10734510	TVO_1901921	Streptococcus pneumoniae
GCA_022069905.1	1	SAMN10734523	TVO_1901935	Streptococcus pneumoniae
GCA_022070005.1	1	SAMN10734522	TVO_1901934	Streptococcus pneumoniae
GCA_022070145.1	1	SAMN10734521	TVO_1901933	Streptococcus pneumoniae
GCA_022070465.1	1	SAMN10734509	TVO_1901920	Streptococcus pneumoniae
GCA_022069505.1	1	SAMN10734527	TVO_1901940	Streptococcus pneumoniae
GCA_022069485.1	1	SAMN10734528	TVO_1901941	Streptococcus pneumoniae
GCA_022069445.1	1	SAMN10734529	TVO_1901943	Streptococcus pneumoniae
GCA_022069325.1	1	SAMN10734530	TVO_1901945	Streptococcus pneumoniae
GCA_022069205.1	1	SAMN10734531	TVO_1901946	Streptococcus pneumoniae
GCA_022068885.1	1	SAMN10734511	TVO_1901922	Streptococcus pneumoniae
GCA_022069005.1	1	SAMN10734533	TVO_1901948	Streptococcus pneumoniae
GCA_022069085.1	1	SAMN10734532	TVO_1901947	Streptococcus pneumoniae
GCA_022070425.1	1	SAMN10734518	TVO_1901930	Streptococcus pneumoniae
GCA_022070365.1	1	SAMN10734519	TVO_1901931	Streptococcus pneumoniae
GCA_022070225.1	1	SAMN10734520	TVO_1901932	Streptococcus pneumoniae
GCA_022075745.1	1	SAMN10734562	TVO_1901929	Streptococcus pneumoniae
GCA_022075645.1	1	SAMN10734565	TVO_1901944	Streptococcus pneumoniae
GCA_022075545.1	1	SAMN10734563	TVO_1901936	Streptococcus pneumoniae
GCA_022070565.1	1	SAMN10734538	TVO_1902282	Streptococcus pneumoniae
GCA_022070545.1	1	SAMN10734539	TVO_1902276	Streptococcus pneumoniae
GCA_022070505.1	1	SAMN10734536	TVO_D39	Streptococcus pneumoniae
GCA_022070485.1	1	SAMN10734540	TVO_1902277	Streptococcus pneumoniae

SRA Data Details

Parameter	Value
Data volume, Gbases	229
Data volume, Mbytes	72354

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Streptococcus pneumoniae

Streptococcus pneumoniae pan-genome influence over gene essentiality and in vivo genetic requirements.

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