Salmonella Bareilly and E. coli (ID 498670) - BioProject

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Accession: PRJNA498670 ID: 498670

Salmonella Bareilly and E. coli

Complete genome assemblies of foodborne pathogens using MinION sequencing

Sequenced two of the most prominent foodborne pathogens that cause severe human illnesses worldwide, Enterohemorrhagic Escherichia coli O157:H7 and Salmonella enterica subsp. More...

Accession	PRJNA498670
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Taylor TL et al., "Rapid, multiplexed, whole genome and plasmid sequencing of foodborne pathogens using long-read nanopore technology.", Sci Rep, 2019 Nov 8;9(1):16350
Grants	"Intervention Strategies to Predict, Prevent and Control Disease Outbreaks Caused by Emerging Strains of Virulent Newcastle Disease Viruses" (Grant ID 6040-32000-064-00D, USDA-ARS-CRIS)
Submission	Registration date: 26-Oct-2018 USDA
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	4
SRA Experiments	2
Protein Sequences	9818
Publications
PubMed	1
PMC	1
Other datasets
BioSample	2
Assembly	2

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Total

2
2

Assembly	Level	Chrs	BioSample	Strain	Taxonomy
GCA_009664305.1		2	SAMN08167607	FSIS11705876	Escherichia coli
GCA_009667855.1		2	SAMN04364135	CFSAN000189	Salmonella enterica subsp. enterica serovar Bareilly str. CFSAN000189

SRA Data Details

Parameter	Value
Data volume, Gbases	7
Data volume, Mbytes	6123

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Salmonella Bareilly and E. coli

Complete genome assemblies of foodborne pathogens using MinION sequencing

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