This SuperSeries is composed of the SubSeries listed below.
Overall design: Refer to individual Series
| Accession | PRJNA498220; GEO: GSE121723 |
| Type | Umbrella project |
| Publications | Wu Y et al., "Glioblastoma epigenome profiling identifies SOX10 as a master regulator of molecular tumour subtype.", Nat Commun, 2020 Dec 18;11(1):6434 |
| Submission | Registration date: 24-Oct-2018
Department of Molecular Genetics, Deutsches Krebsforschungszentrum / German National Cancer Research Centre |
| Relevance | Superseries |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 10 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 289 |
| GEO DataSets | 10 |
GEO Data Details| Parameter | Value |
|---|
| Data volume, Spots | 22049705 |
| Data volume, Processed Mbytes | 608 |
| Data volume, Supplementary Mbytes | 53463 |
| Parameter | Value |
|---|
| Data volume, Gbases | 21 |
| Data volume, Mbytes | 10142 |
Glioblastoma epigenome profiling identifies SOX10 as a master regulator of molecular tumour subtype encompasses the following 9 sub-projects:
| Project Type | Number of Projects |
| Epigenomics | 5 |
BioProject
accession | Organism | Title |
|---|
| PRJNA498223 | Homo sapiens | Glioblastoma epigenome profiling identifies SOX10 as a master regulator of molecular tumour subtype - tumour ChIPseq data (Department of Molecular Genetics,...) | | PRJNA498225 | Homo sapiens | Glioblastoma epigenome profiling identifies SOX10 as a master regulator of molecular tumour subtype - cell line ChIPseq experiments (Department of Molecular Genetics,...) | | PRJNA498226 | Homo sapiens | Glioblastoma epigenome profiling identifies SOX10 as a master regulator of molecular tumour subtype - tumour methylation microarray data (Department of Molecular Genetics,...) | | PRJNA498227 | Homo sapiens | Glioblastoma epigenome profiling identifies SOX10 as a master regulator of molecular tumour subtype - tumour methylation (WGBS) data (Department of Molecular Genetics,...) | | PRJNA549751 | Homo sapiens | Glioblastoma epigenome profiling identifies SOX10 as a master regulator of molecular tumour subtype - cell line ATACseq (Department of Molecular Genetics,...) |
|
| Transcriptome or Gene expression | 4 |
BioProject
accession | Organism | Title |
|---|
| PRJNA498222 | Homo sapiens | Glioblastoma epigenome profiling identifies SOX10 as a master regulator of molecular tumour subtype - cell line gene expression microarray data (Department of Molecular Genetics,...) | | PRJNA498224 | Homo sapiens | Glioblastoma epigenome profiling identifies SOX10 as a master regulator of molecular tumour subtype - cell line RNAseq experiments (Department of Molecular Genetics,...) | | PRJNA498228 | Homo sapiens | Glioblastoma epigenome profiling identifies SOX10 as a master regulator of molecular tumour subtype - tumour rRNA-depleted total ssRNAseq data (Department of Molecular Genetics,...) | | PRJNA607548 | Mus musculus | Glioblastoma epigenome profiling identifies SOX10 as a master regulator of molecular tumour subtype - mouse RNAseq experiments (Department of Molecular Genetics,...) |
|