Comparative transcriptomics of Aspergillus niger w... (ID 488723) - BioProject

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Accession: PRJNA488723 ID: 488723

Comparative transcriptomics of Aspergillus niger when deleted or overexpressed for the putative transcription factors MjkA, MjkB and the histon deactelyase HdaX

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1715 additional projects are related by organism.

Purpose: Expression profiling of two ORFs encoding putative transcription factors: An07g07370 (TF1/MjkA) and An12g07690 (TF2/MjkB), and a histone deacetylase (An09g06520, HdaX) under carbon-limited batch cultivations (biological duplicate runs) in Aspergillus niger. More...

Accession	PRJNA488723; GEO: GSE119311
Data Type	Transcriptome or Gene expression
Scope	Multiisolate
Organism	Aspergillus niger[Taxonomy ID: 5061] Eukaryota; Fungi; Dikarya; Ascomycota; Pezizomycotina; Eurotiomycetes; Eurotiomycetidae; Eurotiales; Aspergillaceae; Aspergillus; Aspergillus subgen. Circumdati; Aspergillus niger
Publications	Schäpe P et al., "Updating genome annotation for the microbial cell factory Aspergillus niger using gene co-expression networks.", Nucleic Acids Res, 2019 Jan 25;47(2):559-569
Submission	Registration date: 31-Aug-2018 Applied and Molecular Microbiology, TU-Berlin
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
SRA Experiments	28
Publications
PubMed	1
PMC	1
Other datasets
BioSample	28
GEO DataSets	1

GEO Data Details

Parameter	Value
Data volume, Supplementary Mbytes	2

SRA Data Details

Parameter	Value
Data volume, Gbases	153
Data volume, Mbytes	63920

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Comparative transcriptomics of Aspergillus niger when deleted or overexpressed for the putative transcription factors MjkA, MjkB and the histon deactelyase HdaX

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