See
Genome Information for Homo sapiens
We performed reduced representative bisulfite sequencing (RRBS) data on 16 pairs of tumor and adjacent normal tissues from oral squamous cell carcinoma patients to identify methylated biomarkers for disease identification
Overall design: DMAP pipeline was used to compare methylation frequencies between cancer and paired normal tissues to get list of differentially methylated regions or DMR
| Accession | PRJNA487627; GEO: GSE118991 |
| Data Type | Epigenomics |
| Scope | Multiisolate |
| Organism | Homo sapiens[Taxonomy ID: 9606] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens |
| Publications | Roy R et al., "Genome-wide miRNA methylome analysis in oral cancer: possible biomarkers associated with patient survival.", Epigenomics, 2019 Apr;11(5):473-487 |
| Submission | Registration date: 23-Aug-2018
human genetics unit, indian statistical institute |
| Relevance | Medical |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 40 |
| Publications |
| PubMed | 1 |
| Other datasets |
| BioSample | 40 |
| GEO DataSets | 1 |