RNA-Seq analysis of localization along animal-vege... (ID 413987) - BioProject

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Accession: PRJNA413987 ID: 413987

RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis (African clawed frog)

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We combined cryosectining of oocytes along the animal-vegetal axis (first developmental axis) and RNA-Seq to determine localization profiles of coding and noncoding RNAs. More...

Accession	PRJNA413987; GEO: GSE104848
Data Type	Transcriptome or Gene expression
Scope	Multiisolate
Organism	Xenopus laevis[Taxonomy ID: 8355] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus; Xenopus laevis
Publications	Naraine R et al., "NormQ: RNASeq normalization based on RT-qPCR derived size factors.", Comput Struct Biotechnol J, 2020;18:1173-1181 Sindelka R et al., "Asymmetric distribution of biomolecules of maternal origin in the Xenopus laevis egg and their impact on the developmental plan.", Sci Rep, 2018 May 29;8(1):8315
Submission	Registration date: 11-Oct-2017 Laboratory of Gene Expression, Institute of Biotechnology, Czech Academy of Science, v.v.i.
Relevance	Model Organism

Project Data:

Resource Name	Number of Links
Sequence data
SRA Experiments	15
Publications
PubMed	2
PMC	2
Other datasets
BioSample	15
GEO DataSets	1

GEO Data Details

Parameter	Value
Data volume, Supplementary Mbytes	6

SRA Data Details

Parameter	Value
Data volume, Gbases	42
Data volume, Mbytes	29433

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RNA-Seq analysis of localization along animal-vegetal axis of Xenopus laevis (African clawed frog)

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