Salmonella enterica subsp. enterica strain:derby (ID 391404) - BioProject

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Accession: PRJNA391404 ID: 391404

Salmonella enterica subsp. enterica strain:derby

Salmonella enterica subsp. enterica strain:derby Genome sequencing and assembly

See Genome Information for Salmonella enterica

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3959 additional projects are related by organism.

This project aim at evaluate the diversity of Salmonella Derby in he pork and poultry sector in France

Accession	PRJNA391404
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Salmonella enterica subsp. enterica[Taxonomy ID: 59201] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica; Salmonella enterica subsp. enterica
Publications	Sévellec Y et al., "Polyphyletic Nature of Salmonella enterica Serotype Derby and Lineage-Specific Host-Association Revealed by Genome-Wide Analysis.", Front Microbiol, 2018;9:891
Submission	Registration date: 12-Sep-2018 ANSES
Relevance	Evolution

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	2957
WGS master	140
Genomic DNA	2
SRA Experiments	435
Protein Sequences	9323
Publications
PubMed	1
PMC	1
Other datasets
BioSample	439
Assembly	142

Assembly details:

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Assembly level

Number of Assemblies

1
1
33
107
142

Assembly	WGS	Chrs	BioSample	Infraspecies Id	Taxonomy
GCA_003549975.1	PCMO00000000		SAMN07734879	2014LSAL00814	Salmonella enterica subsp. enterica serovar Derby
GCA_003549945.1	PCMK00000000		SAMN07734883	2014LSAL01220	Salmonella enterica subsp. enterica serovar Derby
GCA_003549935.1	PCML00000000		SAMN07734882	2014LSAL01158	Salmonella enterica subsp. enterica serovar Derby
GCA_003549905.1	PCMG00000000		SAMN07734887	2014LSAL01383	Salmonella enterica subsp. enterica serovar Derby
GCA_003549895.1	PCME00000000		SAMN07734889	2014LSAL01499	Salmonella enterica subsp. enterica serovar Derby
GCA_003549875.1	PCMB00000000		SAMN07734892	2014LSAL01780	Salmonella enterica subsp. enterica serovar Derby
GCA_003549825.1	PCLY00000000		SAMN07734895	2014LSAL02051	Salmonella enterica subsp. enterica serovar Derby
GCA_003549835.1	PCMA00000000		SAMN07734893	2014LSAL01781	Salmonella enterica subsp. enterica serovar Derby
GCA_003549815.1	PCMU00000000		SAMN07734897	2014LSAL02163	Salmonella enterica subsp. enterica serovar Derby
GCA_003549785.1	PCLW00000000		SAMN07734898	2014LSAL02205	Salmonella enterica subsp. enterica serovar Derby
GCA_003549775.1	PCLR00000000		SAMN07734903	2014LSAL02441	Salmonella enterica subsp. enterica serovar Derby
GCA_003549755.1	PCLQ00000000		SAMN07734904	2014LSAL02463	Salmonella enterica subsp. enterica serovar Derby
GCA_003549725.1	PCLO00000000		SAMN07734906	2014LSAL02838	Salmonella enterica subsp. enterica serovar Derby
GCA_003549715.1	PCKZ00000000		SAMN07734921	2014LSAL03396	Salmonella enterica subsp. enterica serovar Derby
GCA_003549695.1	PCKY00000000		SAMN07734922	2014LSAL03398	Salmonella enterica subsp. enterica serovar Derby
GCA_003549665.1	PCKX00000000		SAMN07734923	2014LSAL03401	Salmonella enterica subsp. enterica serovar Derby
GCA_003549655.1	PCKP00000000		SAMN07734932	2014LSAL03463	Salmonella enterica subsp. enterica serovar Derby
GCA_003549635.1	PCKO00000000		SAMN07734933	2014LSAL03465	Salmonella enterica subsp. enterica serovar Derby
GCA_003549605.1	PCKL00000000		SAMN07734936	2014LSAL03510	Salmonella enterica subsp. enterica serovar Derby
GCA_003549575.1	PCKA00000000		SAMN07734947	2014LSAL03976	Salmonella enterica subsp. enterica serovar Derby
GCA_003549595.1	PCKG00000000		SAMN07734941	2014LSAL03785	Salmonella enterica subsp. enterica serovar Derby
GCA_003549555.1	PCJY00000000		SAMN07734949	2014LSAL04065	Salmonella enterica subsp. enterica serovar Derby
GCA_003549515.1	PCJU00000000		SAMN07734953	2014LSAL05133	Salmonella enterica subsp. enterica serovar Derby
GCA_003549525.1	PCJV00000000		SAMN07734952	2014LSAL04833	Salmonella enterica subsp. enterica serovar Derby
GCA_003549495.1	PCJQ00000000		SAMN07734957	2014LSAL05735	Salmonella enterica subsp. enterica serovar Derby
GCA_003549475.1	PCJN00000000		SAMN07734960	2015LSAL00190	Salmonella enterica subsp. enterica serovar Derby
GCA_003549445.1	PCJI00000000		SAMN07734965	2015LSAL00452	Salmonella enterica subsp. enterica serovar Derby
GCA_003549435.1	PCJC00000000		SAMN07734971	2015LSAL00981	Salmonella enterica subsp. enterica serovar Derby
GCA_003549415.1	PCIX00000000		SAMN07734976	2015LSAL01075	Salmonella enterica subsp. enterica serovar Derby
GCA_003549375.1	PCIR00000000		SAMN07734982	2015LSAL01578	Salmonella enterica subsp. enterica serovar Derby
GCA_003549385.1	PCIS00000000		SAMN07734981	2015LSAL01474	Salmonella enterica subsp. enterica serovar Derby
GCA_003549355.1	PCIM00000000		SAMN07734987	2015LSAL01748	Salmonella enterica subsp. enterica serovar Derby
GCA_003549325.1	PCIL00000000		SAMN07734988	2015LSAL01817	Salmonella enterica subsp. enterica serovar Derby
GCA_003549315.1	PCIK00000000		SAMN07734989	2015LSAL01821	Salmonella enterica subsp. enterica serovar Derby
GCA_003549295.1	PCIG00000000		SAMN07734993	2015LSAL02005	Salmonella enterica subsp. enterica serovar Derby
GCA_003549275.1	PCIE00000000		SAMN07734995	2015LSAL02588	Salmonella enterica subsp. enterica serovar Derby
GCA_003549255.1	PCID00000000		SAMN07734997	2015LSAL02717	Salmonella enterica subsp. enterica serovar Derby
GCA_003549235.1	PCIB00000000		SAMN07734999	2015LSAL03260	Salmonella enterica subsp. enterica serovar Derby
GCA_003549215.1	PCHW00000000		SAMN07735004	2015LSAL03563	Salmonella enterica subsp. enterica serovar Derby
GCA_003549175.1	PCHT00000000		SAMN07735007	2015LSAL03891	Salmonella enterica subsp. enterica serovar Derby
GCA_003549185.1	PCHV00000000		SAMN07735005	2015LSAL03564	Salmonella enterica subsp. enterica serovar Derby
GCA_003549155.1	PCHP00000000		SAMN07735011	2015LSAL04227	Salmonella enterica subsp. enterica serovar Derby
GCA_003549125.1	PCHO00000000		SAMN07735012	2015LSAL04264	Salmonella enterica subsp. enterica serovar Derby
GCA_003549115.1	PCHM00000000		SAMN07735014	2015LSAL04562	Salmonella enterica subsp. enterica serovar Derby
GCA_003549095.1	PCHK00000000		SAMN07735016	2016LSAL00056	Salmonella enterica subsp. enterica serovar Derby
GCA_003549065.1	PCMT00000000		SAMN07734874	2014LSAL00274	Salmonella enterica subsp. enterica serovar Derby
GCA_003549045.1	PCMS00000000		SAMN07734875	2014LSAL00337	Salmonella enterica subsp. enterica serovar Derby
GCA_003549035.1	PCMR00000000		SAMN07734876	2014LSAL00455	Salmonella enterica subsp. enterica serovar Derby
GCA_003548975.1	PCMN00000000		SAMN07734880	2014LSAL00873	Salmonella enterica subsp. enterica serovar Derby
GCA_003548985.1	PCMP00000000		SAMN07734878	2014LSAL00762	Salmonella enterica subsp. enterica serovar Derby
GCA_003548995.1	PCMQ00000000		SAMN07734877	2014LSAL00717	Salmonella enterica subsp. enterica serovar Derby
GCA_003548945.1	PCMM00000000		SAMN07734881	2014LSAL00980	Salmonella enterica subsp. enterica serovar Derby
GCA_003548925.1	PCMJ00000000		SAMN07734884	2014LSAL01256	Salmonella enterica subsp. enterica serovar Derby
GCA_003548915.1	PCMI00000000		SAMN07734885	2014LSAL01306	Salmonella enterica subsp. enterica serovar Derby
GCA_003548895.1	PCMH00000000		SAMN07734886	2014LSAL01311	Salmonella enterica subsp. enterica serovar Derby
GCA_003548855.1	PCMD00000000		SAMN07734890	2014LSAL01651	Salmonella enterica subsp. enterica serovar Derby
GCA_003548865.1	PCMF00000000		SAMN07734888	2014LSAL01467	Salmonella enterica subsp. enterica serovar Derby
GCA_003548825.1	PCMC00000000		SAMN07734891	2014LSAL01779	Salmonella enterica subsp. enterica serovar Derby
GCA_003548805.1	PCLZ00000000		SAMN07734894	2014LSAL01894	Salmonella enterica subsp. enterica serovar Derby
GCA_003548795.1	PCLX00000000		SAMN07734896	2014LSAL02073	Salmonella enterica subsp. enterica serovar Derby
GCA_003548765.1	PCLV00000000		SAMN07734899	2014LSAL02278	Salmonella enterica subsp. enterica serovar Derby
GCA_003548755.1	PCLU00000000		SAMN07734900	2014LSAL02285	Salmonella enterica subsp. enterica serovar Derby
GCA_003548735.1	PCLT00000000		SAMN07734901	2014LSAL02325	Salmonella enterica subsp. enterica serovar Derby
GCA_003548695.1	PCLS00000000		SAMN07734902	2014LSAL02431	Salmonella enterica subsp. enterica serovar Derby
GCA_003548705.1	PCLP00000000		SAMN07734905	2014LSAL02547	Salmonella enterica subsp. enterica serovar Derby
GCA_003548675.1	PCLN00000000		SAMN07734907	2014LSAL03150	Salmonella enterica subsp. enterica serovar Derby
GCA_003548645.1	PCLM00000000		SAMN07734908	2014LSAL03218	Salmonella enterica subsp. enterica serovar Derby
GCA_003548635.1	PCLL00000000		SAMN07734909	2014LSAL03309	Salmonella enterica subsp. enterica serovar Derby
GCA_003548595.1	PCLJ00000000		SAMN07734911	2014LSAL03342	Salmonella enterica subsp. enterica serovar Derby
GCA_003548605.1	PCLK00000000		SAMN07734910	2014LSAL03340	Salmonella enterica subsp. enterica serovar Derby
GCA_003548565.1	PCLI00000000		SAMN07734912	2014LSAL03344	Salmonella enterica subsp. enterica serovar Derby
GCA_003548545.1	PCLH00000000		SAMN07734913	2014LSAL03348	Salmonella enterica subsp. enterica serovar Derby
GCA_003548535.1	PCLG00000000		SAMN07734914	2014LSAL03350	Salmonella enterica subsp. enterica serovar Derby
GCA_003548485.1	PCLE00000000		SAMN07734916	2014LSAL03356	Salmonella enterica subsp. enterica serovar Derby
GCA_003548495.1	PCLF00000000		SAMN07734915	2014LSAL03355	Salmonella enterica subsp. enterica serovar Derby
GCA_003548475.1	PCLD00000000		SAMN07734917	2014LSAL03383	Salmonella enterica subsp. enterica serovar Derby
GCA_003548445.1	PCLC00000000		SAMN07734918	2014LSAL03388	Salmonella enterica subsp. enterica serovar Derby
GCA_003548435.1	PCLB00000000		SAMN07734919	2014LSAL03390	Salmonella enterica subsp. enterica serovar Derby
GCA_003548415.1	PCLA00000000		SAMN07734920	2014LSAL03393	Salmonella enterica subsp. enterica serovar Derby
GCA_003548395.1	PCKW00000000		SAMN07734924	2014LSAL03404	Salmonella enterica subsp. enterica serovar Derby
GCA_003548355.1	PCKV00000000		SAMN07734926	2014LSAL03407	Salmonella enterica subsp. enterica serovar Derby
GCA_003548365.1	PCKU00000000		SAMN07734927	2014LSAL03409	Salmonella enterica subsp. enterica serovar Derby
GCA_003548335.1	PCKT00000000		SAMN07734928	2014LSAL03410	Salmonella enterica subsp. enterica serovar Derby
GCA_003548315.1	PCKS00000000		SAMN07734929	2014LSAL03414	Salmonella enterica subsp. enterica serovar Derby
GCA_003548295.1	PCKR00000000		SAMN07734930	2014LSAL03416	Salmonella enterica subsp. enterica serovar Derby
GCA_003548275.1	PCKQ00000000		SAMN07734931	2014LSAL03420	Salmonella enterica subsp. enterica serovar Derby
GCA_003548235.1	PCKM00000000		SAMN07734935	2014LSAL03478	Salmonella enterica subsp. enterica serovar Derby
GCA_003548245.1	PCKN00000000		SAMN07734934	2014LSAL03470	Salmonella enterica subsp. enterica serovar Derby
GCA_003548215.1	PCKK00000000		SAMN07734937	2014LSAL03521	Salmonella enterica subsp. enterica serovar Derby
GCA_003548185.1	PCKJ00000000		SAMN07734938	2014LSAL03524	Salmonella enterica subsp. enterica serovar Derby
GCA_003548175.1	PCKI00000000		SAMN07734939	2014LSAL03616	Salmonella enterica subsp. enterica serovar Derby
GCA_003548115.1	PCKE00000000		SAMN07734943	2014LSAL03926	Salmonella enterica subsp. enterica serovar Derby
GCA_003548145.1	PCKH00000000		SAMN07734940	2014LSAL03694	Salmonella enterica subsp. enterica serovar Derby
GCA_003548125.1	PCKF00000000		SAMN07734942	2014LSAL03787	Salmonella enterica subsp. enterica serovar Derby
GCA_003548075.1	PCKD00000000		SAMN07734944	2014LSAL03973	Salmonella enterica subsp. enterica serovar Derby
GCA_003548055.1	PCKB00000000		SAMN07734946	2014LSAL03975	Salmonella enterica subsp. enterica serovar Derby
GCA_003548065.1	PCKC00000000		SAMN07734945	2014LSAL03974	Salmonella enterica subsp. enterica serovar Derby
GCA_003548025.1	PCJZ00000000		SAMN07734948	2014LSAL03985	Salmonella enterica subsp. enterica serovar Derby
GCA_003547995.1	PCJW00000000		SAMN07734951	2014LSAL04673	Salmonella enterica subsp. enterica serovar Derby
GCA_003548015.1	PCJX00000000		SAMN07734950	2014LSAL04466	Salmonella enterica subsp. enterica serovar Derby
GCA_003547955.1	PCJS00000000		SAMN07734955	2014LSAL05495	Salmonella enterica subsp. enterica serovar Derby
GCA_003547975.1	PCJT00000000		SAMN07734954	2014LSAL05213	Salmonella enterica subsp. enterica serovar Derby
GCA_003547935.1	PCJR00000000		SAMN07734956	2014LSAL05538	Salmonella enterica subsp. enterica serovar Derby
GCA_003547895.1	PCJO00000000		SAMN07734959	2015LSAL00137	Salmonella enterica subsp. enterica serovar Derby
GCA_003547905.1	PCJP00000000		SAMN07734958	2015LSAL00134	Salmonella enterica subsp. enterica serovar Derby
GCA_003547875.1	PCJM00000000		SAMN07734961	2015LSAL00219	Salmonella enterica subsp. enterica serovar Derby
GCA_003547845.1	PCJL00000000		SAMN07734962	2015LSAL00314	Salmonella enterica subsp. enterica serovar Derby
GCA_003547825.1	PCJK00000000		SAMN07734963	2015LSAL00428	Salmonella enterica subsp. enterica serovar Derby
GCA_003547815.1	PCJJ00000000		SAMN07734964	2015LSAL00429	Salmonella enterica subsp. enterica serovar Derby
GCA_003547795.1	PCJH00000000		SAMN07734966	2015LSAL00465	Salmonella enterica subsp. enterica serovar Derby
GCA_003547755.1	PCJF00000000		SAMN07734968	2015LSAL00641	Salmonella enterica subsp. enterica serovar Derby
GCA_003547765.1	PCJG00000000		SAMN07734967	2015LSAL00477	Salmonella enterica subsp. enterica serovar Derby
GCA_003547735.1	PCJE00000000		SAMN07734969	2015LSAL00691	Salmonella enterica subsp. enterica serovar Derby
GCA_003547695.1	PCJB00000000		SAMN07734972	2015LSAL00989	Salmonella enterica subsp. enterica serovar Derby
GCA_003547705.1	PCJD00000000		SAMN07734970	2015LSAL00728	Salmonella enterica subsp. enterica serovar Derby
GCA_003547665.1	PCJA00000000		SAMN07734973	2015LSAL00990	Salmonella enterica subsp. enterica serovar Derby
GCA_003547655.1	PCIZ00000000		SAMN07734974	2015LSAL01029	Salmonella enterica subsp. enterica serovar Derby
GCA_003547635.1	PCIY00000000		SAMN07734975	2015LSAL01058	Salmonella enterica subsp. enterica serovar Derby
GCA_003547605.1	PCIV00000000		SAMN07734978	2015LSAL01314	Salmonella enterica subsp. enterica serovar Derby
GCA_003547595.1	PCIW00000000		SAMN07734977	2015LSAL01179	Salmonella enterica subsp. enterica serovar Derby
GCA_003547575.1	PCIU00000000		SAMN07734979	2015LSAL01334	Salmonella enterica subsp. enterica serovar Derby
GCA_003547555.1	PCIT00000000		SAMN07734980	2015LSAL01341	Salmonella enterica subsp. enterica serovar Derby
GCA_003547535.1	PCIQ00000000		SAMN07734983	2015LSAL01591	Salmonella enterica subsp. enterica serovar Derby
GCA_003547515.1	PCIP00000000		SAMN07734984	2015LSAL01697	Salmonella enterica subsp. enterica serovar Derby
GCA_003547495.1	PCIO00000000		SAMN07734985	2015LSAL01713	Salmonella enterica subsp. enterica serovar Derby
GCA_003547475.1	PCIN00000000		SAMN07734986	2015LSAL01716	Salmonella enterica subsp. enterica serovar Derby
GCA_003547455.1	PCIJ00000000		SAMN07734990	2015LSAL01829	Salmonella enterica subsp. enterica serovar Derby
GCA_003547435.1	PCIH00000000		SAMN07734992	2015LSAL01973	Salmonella enterica subsp. enterica serovar Derby
GCA_003547415.1	PCIF00000000		SAMN07734994	2015LSAL02462	Salmonella enterica subsp. enterica serovar Derby
GCA_003547375.1	PCIA00000000		SAMN07735000	2015LSAL03284	Salmonella enterica subsp. enterica serovar Derby
GCA_003547385.1	PCIC00000000		SAMN07734998	2015LSAL03121	Salmonella enterica subsp. enterica serovar Derby
GCA_003547335.1	PCHY00000000		SAMN07735002	2015LSAL03548	Salmonella enterica subsp. enterica serovar Derby
GCA_003547345.1	PCHZ00000000		SAMN07735001	2015LSAL03285	Salmonella enterica subsp. enterica serovar Derby
GCA_003547315.1	PCHX00000000		SAMN07735003	2015LSAL03550	Salmonella enterica subsp. enterica serovar Derby
GCA_003547285.1	PCHU00000000		SAMN07735006	2015LSAL03879	Salmonella enterica subsp. enterica serovar Derby
GCA_003547265.1	PCHS00000000		SAMN07735008	2015LSAL04018	Salmonella enterica subsp. enterica serovar Derby
GCA_003547255.1	PCHR00000000		SAMN07735009	2015LSAL04158	Salmonella enterica subsp. enterica serovar Derby
GCA_003547195.1	PCHQ00000000		SAMN07735010	2015LSAL04225	Salmonella enterica subsp. enterica serovar Derby
GCA_003547205.1	PCHL00000000		SAMN07735015	2016LSAL00028	Salmonella enterica subsp. enterica serovar Derby
GCA_003547215.1	PCHN00000000		SAMN07735013	2015LSAL04332	Salmonella enterica subsp. enterica serovar Derby
GCA_002946375.1		1	SAMN08470240	2014LSAL01779	Salmonella enterica subsp. enterica serovar Derby
GCA_003171775.1		1	SAMN08804085	2014LSAL02547	Salmonella enterica subsp. enterica serovar Derby

SRA Data Details

Parameter	Value
Data volume, Gbases	357
Data volume, Tbytes	0.16

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Salmonella enterica subsp. enterica strain:derby

Salmonella enterica subsp. enterica strain:derby Genome sequencing and assembly

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