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Accession: PRJNA352720 ID: 352720

Arabidopsis thaliana (thale cress)

RNA-seq of Arabidopsis thaliana Col-0 siliques

See Genome Information for Arabidopsis thaliana
Paired-end Illumina RNA sequencing of Arabidopsis thaliana Col-0 siliques. Overall design: mRNA profiles of Arabidopsis Col-0 WT siliques were generated by paired-end deep sequencing, in replicate using Illumina HiSeq 2000.
AccessionPRJNA352720; GEO: GSE89617
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismArabidopsis thaliana[Taxonomy ID: 3702]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis; Arabidopsis thaliana
PublicationsPumplin N et al., "DNA Methylation Influences the Expression of DICER-LIKE4 Isoforms, Which Encode Proteins of Alternative Localization and Function.", Plant Cell, 2016 Nov;28(11):2786-2804
SubmissionRegistration date: 7-Nov-2016
Group Prof. Olivier Voinnet, Department of Biology, ETHZ
NCBI Links
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments2
Publications
PubMed1
PMC1
Other datasets
BioSample2
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes2
SRA Data Details
ParameterValue
Data volume, Gbases17
Data volume, Mbytes10627

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