Rattus norvegicus (ID 312384) - BioProject

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Accession: PRJNA312384 ID: 312384

Rattus norvegicus (Norway rat)

microRNA profiling of Sprague Dawley organs

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We performed deep sequencing of the miRNAs present in ~20 toxicologically relevant tissues in Sprague Dawley rats and used three independent analysis of the data to determine which miRNAs are tissue specific and tissue enriched. More...

Accession	PRJNA312384; GEO: GSE78031
Data Type	Transcriptome or Gene expression
Scope	Multiisolate
Organism	Rattus norvegicus[Taxonomy ID: 10116] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus; Rattus norvegicus
Publications	Bushel PR et al., "RATEmiRs: the rat atlas of tissue-specific and enriched miRNAs database.", BMC Genomics, 2018 Nov 19;19(1):825 Smith A et al., "The Rat microRNA body atlas; Evaluation of the microRNA content of rat organs through deep sequencing and characterization of pancreas enriched miRNAs as biomarkers of pancreatic toxicity in the rat and dog.", BMC Genomics, 2016 Aug 30;17(1):694
Submission	Registration date: 17-Feb-2016 Investigative Toxicology, Eli Lilly
Relevance	Model Organism

Project Data:

Resource Name	Number of Links
Sequence data
SRA Experiments	458
Publications
PubMed	2
PMC	2
Other datasets
BioSample	458
GEO DataSets	1

GEO Data Details

Parameter	Value
Data volume, Supplementary Mbytes	14

SRA Data Details

Parameter	Value
Data volume, Gbases	76
Data volume, Mbytes	43755

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Rattus norvegicus (Norway rat)

microRNA profiling of Sprague Dawley organs

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