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Accession: PRJNA299026 ID: 299026

Mus musculus (house mouse)

Genome-wide maps of histone marks, Sox2, Oct4 and PARP-1 in mES cells.

See Genome Information for Mus musculus
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This project is a component of the Regulation of gene transcription and transcription factor chromatin binding by PARP-1 in mouse embryonic stem cells
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1 additional project is a component of the Regulation of gene transcription and transcription factor chromatin binding by PARP-1 in mouse embryonic stem cells.
71681 additional projects are related by organism.
ChIP-seq was performed to analyze genome-wide distribution of PARP-1 and histone marks H3K4me3, H3K27me3 in mES cells, and examine the effect of PARP-1 knockout on Sox2 and Oct4 genome-wide distribution in ES cells. More...
AccessionPRJNA299026; GEO: GSE74112
Data TypeEpigenomics
ScopeMultiisolate
OrganismMus musculus[Taxonomy ID: 10090]
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Mus; Mus; Mus musculus
PublicationsLiu Z et al., "Catalytic-Independent Functions of PARP-1 Determine Sox2 Pioneer Activity at Intractable Genomic Loci.", Mol Cell, 2017 Feb 16;65(4):589-603.e9
SubmissionRegistration date: 16-Oct-2015
UT Southwestern Medical Center
RelevanceModel Organism
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments18
Publications
PubMed1
PMC1
Other datasets
BioSample18
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes1152
SRA Data Details
ParameterValue
Data volume, Gbases23
Data volume, Mbytes16404

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