See
Genome Information for Escherichia coli
DNA microarray experiments were used to compare gene expression profiles of untreated and 5-azacytidine treated Escherichia coli at both logarithmic phase and early stationary phase
The goal was to determine the effect of cytosine DNA methylation loss on gene expression (5-azacytidine is a methylation inhibitor)
Overall design: Untreated versus 5-azacytidine-treated cells at logarithmic phase and early stationary phase; 5 biological replicates both all experiments
| Accession | PRJNA297697; GEO: GSE73707 |
| Data Type | Transcriptome or Gene expression |
| Scope | Multiisolate |
| Organism | Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli |
| Publications | Militello KT et al., "5-azacytidine induces transcriptome changes in Escherichia coli via DNA methylation-dependent and DNA methylation-independent mechanisms.", BMC Microbiol, 2016 Jun 27;16(1):130 |
| Submission | Registration date: 2-Oct-2015
Biology, State University of New York at Geneseo |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
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| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| GEO DataSets | 1 |
GEO Data Details| Parameter | Value |
|---|
| Data volume, Spots | 44350 |
| Data volume, Processed Mbytes | 1 |
| Data volume, Supplementary Mbytes | 20 |