Streptococcus pneumoniae (ID 284954) - BioProject

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Accession: PRJNA284954 ID: 284954

Streptococcus pneumoniae

Characterization of invasive pneumococcal isolates recovered from individuals in the United States through the Active Bacterial Core surveillance program

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These isolates were sequenced in order to deduce key strain parameters that are thought to be important for establishment of disease and success in carriage, including capsular serotypes, resistance features, and pilus determinants. More...

Accession	PRJNA284954
Data Type	Raw sequence reads
Scope	Multiisolate
Organism	Streptococcus pneumoniae[Taxonomy ID: 1313] Bacteria; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus; Streptococcus pneumoniae
Publications	Beall B et al., "Increased proportions of invasive pneumococcal disease cases amongs adults experiencing homelessness sets stage for new serotype 4 capsular-switch recombinant.", J Infect Dis, 2024 Sep 11; Chochua S et al., "The emergent invasive serotype 4 ST10172 strain acquires vanG type vancomycin-resistance element: A case of a 66-year-old with bacteremic pneumococcal pneumonia.", J Infect Dis, 2024 Aug 8;
Submission	Registration date: 26-May-2015 Centers for Disease Control and Prevention
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	4
SRA Experiments	20059
Protein Sequences	7414
Publications
PubMed	2
Other datasets
BioSample	20567
Assembly	4

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Total

4
4

Assembly	Chrs	BioSample	Strain	Taxonomy
GCA_041937155.1	1	SAMN41045349	20234287	Streptococcus pneumoniae
GCA_041937145.1	1	SAMN41043047	20155336	Streptococcus pneumoniae
GCA_041937135.1	1	SAMN41043309	20234295	Streptococcus pneumoniae
GCA_041228315.1	1	SAMN41136366	serotype 4	Streptococcus pneumoniae

SRA Data Details

Parameter	Value
Data volume, Gbases	4,764
Data volume, Tbytes	2.61

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Streptococcus pneumoniae

Characterization of invasive pneumococcal isolates recovered from individuals in the United States through the Active Bacterial Core surveillance program

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