Transcriptional profiles of Salmonella Typhimurium... (ID 268952) - BioProject

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Accession: PRJNA268952 ID: 268952

Transcriptional profiles of Salmonella Typhimurium 4/74 parent and relA spoT, rpoS and dksA strains during stationary phase, and RNA polymerase distribution as determined by chromatin immunoprecipitation in parent, relA spoT and dksA strains

This SuperSeries is composed of the SubSeries listed below. Overall design: Refer to individual Series

Accession	PRJNA268952; GEO: GSE63715
Type	Umbrella project
Publications	Rice CJ et al., "Transcriptional and Post-Transcriptional Modulation of SPI1 and SPI2 Expression by ppGpp, RpoS and DksA in Salmonella enterica sv Typhimurium.", PLoS One, 2015;10(6):e0127523
Submission	Registration date: 28-Nov-2014 Institute of Food Research
Relevance	Superseries

Project Data:

Resource Name	Number of Links
Publications
PubMed	1
PMC	1
Other datasets
GEO DataSets	4

GEO Data Details

Parameter	Value
Data volume, Spots	2152080
Data volume, Processed Mbytes	37
Data volume, Supplementary Mbytes	202

Transcriptional profiles of Salmonella Typhimurium 4/74 parent and relA spoT, rpoS and dksA strains during stationary phase, and RNA polymerase distribution as determined by chromatin immunoprecipitation in parent, relA spoT and dksA strains encompasses the following 3 sub-projects:

Project Type

Number of Projects

Epigenomics

BioProject accession	Organism	Title
PRJNA268956	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344	RNA polymerase binding sites revealed by ChIP-chip in S. Typhimurium wild-type, ΔrelAΔspoT (ppGpp0), and ΔdksA strains at early stationary phase (ESP) and late stationary phase (LSP) (Institute of Food Research)

Transcriptome or Gene expression

BioProject accession	Organism	Title
PRJNA268954	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344	Transcriptomic profiles of S. Typhimurium SL1344 parent strain and ΔrpoS and ΔrelAΔspoT and ΔrelAΔspoTΔrpoS mutant strains grown to various optical densities during late-log and stationary phase in LB aerobic batch culture (Institute of Food Research)
PRJNA268955	Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344	Transcriptomic profiles of S. Typhimurium SL1344 parent strain and ΔdksA and ΔrelAΔspoTΔdksA mutant strains grown to various optical densities during late-log and stationary phase in LB aerobic batch culture (Institute of Food Research)

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Transcriptional profiles of Salmonella Typhimurium 4/74 parent and relA spoT, rpoS and dksA strains during stationary phase, and RNA polymerase distribution as determined by chromatin immunoprecipitation in parent, relA spoT and dksA strains

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