Rattus norvegicus (ID 246364) - BioProject

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Accession: PRJNA246364 ID: 246364

Rattus norvegicus (Norway rat)

mRNA-seq analysis of superficial zone (SFZ) and deeper layers (deep AC) of articular cartilage of adult rats

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We compared gene expression profiles of SFZ and deep AC of articular cartilage through laser microdissection (LMD) using adhesive tape, linear amplification of mRNA, and mRNA-seq analysis. More...

Accession	PRJNA246364; GEO: GSE57377
Data Type	Transcriptome or Gene expression
Scope	Multiisolate
Organism	Rattus norvegicus[Taxonomy ID: 10116] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Glires; Rodentia; Myomorpha; Muroidea; Muridae; Murinae; Rattus; Rattus norvegicus
Publications	Mori Y et al., "Determination of differential gene expression profiles in superficial and deeper zones of mature rat articular cartilage using RNA sequencing of laser microdissected tissue specimens.", Biomed Res, 2014;35(4):263-70
Submission	Registration date: 7-May-2014 Orthopaedic Surgery, Tokyo University
Relevance	Model Organism

Project Data:

Resource Name	Number of Links
Sequence data
SRA Experiments	4
Publications
PubMed	1
Other datasets
BioSample	4
GEO DataSets	1

GEO Data Details

Parameter	Value
Data volume, Supplementary Mbytes	5

SRA Data Details

Parameter	Value
Data volume, Gbases	13
Data volume, Mbytes	7680

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Rattus norvegicus
Rattus norvegicus
mRNA-seq analysis of superficial zone (SFZ) and deeper layers (deep AC) of articular cartilage of adult rats

BioProject
Homo sapiens brix domain containing 1, mRNA (cDNA clone MGC:21067 IMAGE:4745524)...
Homo sapiens brix domain containing 1, mRNA (cDNA clone MGC:21067 IMAGE:4745524), complete cds
gi|22268136|gb|BC035314.1|

Nucleotide
PREDICTED: crk-like protein isoform X1 [Nanorana parkeri]
PREDICTED: crk-like protein isoform X1 [Nanorana parkeri]
gi|1072286652|ref|XP_018429734.1|

Protein
PREDICTED: Xiphias gladius plectin a (pleca), transcript variant X6, mRNA
PREDICTED: Xiphias gladius plectin a (pleca), transcript variant X6, mRNA
gi|2007692578|ref|XM_040122438.1|

Nucleotide
telethonin-like [Dermochelys coriacea]
telethonin-like [Dermochelys coriacea]
gi|1950432504|ref|XP_038241769.1|

Protein

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